TCONS_00037577 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037577
Unique NameTCONS_00037577
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037577 ID=TCONS_00037577|Name=TCONS_00037577|organism=Clytia hemisphaerica|type=transcript|length=483bp
GATATCTCGACTTTAAAATATAGTTAGACAAAGATACTTCGTGGCTTTAC
TCAAAACAACGAggttttcttcaggcaaaaaatctcaaactactgattat
ccctttaagtttCATGCCACCTGTATGGACGACAATCATCAGTTAAAATC
GCTTGAGGAATCTTCATATGCAATGGCTTCTTCGTTTAAAATTCTGACGC
CAATTTTTTAGATGATGCATATTTGTCAATTATCAATGTCAATTATAATA
ATTTATTCATTCATAgtattatatttcacaggtctatcgacctctccCTT
ATATTTAATACAAATCTTTTACATAATTATtttcttaaattattttttga
tcaatttttcatttgtaaaatttgcTTTCTGTTAACTTTACAATTATTTT
CATAATATATTTCTGTATATATTATCCATTACATATTTCTATCTAAatta
ttaaatttaaatttagattGTAACGTCTTCGAc
Run BLAST on NCBI

transcript from alignment at sc0001656:1152..1634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037577 ID=TCONS_00037577|Name=TCONS_00037577|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at sc0001656:1152..1634 (Clytia hemisphaerica)
gTCGAAGACGTTACaatctaaatttaaatttaataatTTAGATAGAAATA
TGTAATGGATAATATATACAGAAATATATTATGAAAATAATTGTAAAGTT
AACAGAAAgcaaattttacaaatgaaaaattgatcaaaaaataatttaag
aaaATAATTATGTAAAAGATTTGTATTAAATATAAGggagaggtcgatag
acctgtgaaatataatacTATGAATGAATAAATTATTATAATTGACATTG
ATAATTGACAAATATGCATCATCTAAAAAATTGGCGTCAGAATTTTAAAC
GAAGAAGCCATTGCATATGAAGATTCCTCAAGCGATTTTAACTGATGATT
GTCGTCCATACAGGTGGCATGaaacttaaagggataatcagtagtttgag
attttttgcctgaagaaaaccTCGTTGTTTTGAGTAAAGCCACGAAGTAT
CTTTGTCTAACTATATTTTAAAGTCGAGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022334XLOC_022334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037577-exon-sc0001656-1491911889:1152..1634TCONS_00037577-exon-sc0001656-1491911889:1152..1634Clytia hemisphaericaexon
TCONS_00037577-exon-sc0001656-1510915933:1152..1634TCONS_00037577-exon-sc0001656-1510915933:1152..1634Clytia hemisphaericaexon
TCONS_00037577-exon-sc0001656-1575043694:1152..1634TCONS_00037577-exon-sc0001656-1575043694:1152..1634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001656supercontigsc0001656:1152..1634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.647404	0.505057	0	0	3.31763	1.93173	2.66349	2.64937	3.27333	2.02727	2.62363	3.10441	3.1862	3.39833	1.10285	1.10463	0	1.0959	1.12403	2.7366	0.375568	1.28232	1.33614	0.613777	2.08527	2.72954	0.355088	0	1.58085	0.878529
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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