TCONS_00037574 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037574
Unique NameTCONS_00037574
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length401

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037574 ID=TCONS_00037574|Name=TCONS_00037574|organism=Clytia hemisphaerica|type=transcript|length=401bp
ttaaggctttttggcTTTCCCGGATGATATTTTCAATGGAATATTCAAAA
ATACTGTTTTCACGGAATATCCAATTTTACTTCCAAACCTGGTCATTGCA
GTCTGTTATATTGCATTGCTGATTGGGACGTCTTTTATGTATTATCAGCC
TTACTACAGgaggATTGCGCCCTCTGAAGCTGACGAAGAAGCAAAAGAAG
AAGCCTACGTAGAAACAGTGAAAATGATTCTTCAAAGTGATaatgaagaa
gatgaagatgaaaaacatggcaagaaaaaaagtctgtctcaaacAATCAA
ATCTTCCAGATTTTATAAAGTTATTACGGATACAAATTTTCTCGTATGCG
CATCATCTTATTCCCTGTTTGGTTTCACTGCTACTGGCTTCAATCAACTG
T
Run BLAST on NCBI

transcript from alignment at sc0001656:42183..44267-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037574 ID=TCONS_00037574|Name=TCONS_00037574|organism=Clytia hemisphaerica|type=transcript|length=2085bp|location=Sequence derived from alignment at sc0001656:42183..44267- (Clytia hemisphaerica)
TTAAGGCTTTTTGGCTTTCCCGGATGATATTTTCAATGGAATATTCAAAA
GTCAGTATATATTTTCTTCGACCTAAATAGCTTTAATATGACATTTACAT
GTGACGAAGCCACATTAATTTTAAAGATGCTAAATCTATATTTTCACAAA
CGATTTGAACCATCAGTGCATGACCTGATTCCTCTCACAGGACATGGATC
GACCTAGGCGAAGGTACATTAACTTGGAAAGCACTGAGTGGGAATCGAAC
CGCGATCTTTAAGGCTAATAACCACTACACTACTATTCGGTCTTTTTTTT
AGATACTGTTTTCACGGAATATCCAATTTTACTTCCAAACCTGGTCATTG
CAGTCTGTTATATTGCATTGCTGATTGGGACGTCTTTTATGTATTATCAG
CCTTACTACAGGTATGTCAATTTAAAGGTTTTGTTTTTAAACTATGATTG
ATATCGTTTGCTTACTCATCAATTTTAATTCACAAGCTTTTTCACATTGG
ATTGACACAGATGTGAAGCAAGAGTAAAAGAAAAATAATTTTATACACTG
TCTTGATACGAAATATGTGTCTGATATGAAACAGGAACACTCATGTAAAA
ATAAAACCTTTAATTAATAATTTTCCTAATGGAAAAGATATCGAGTGAAA
GTCTGCGACCGCAGTCGGAGGCAACCAAAGGCATCTCTTCCAATAGCTAC
CTACCTGAATGTAGAGGAGGGCGCGACCGTTTCTCCCTGGATATCTCCAC
TTATATCATTAATCCTTTTCTTTAGTCACTGACTGATGCAGGTCTTTCAG
ATTGAAATATTAAGCATACAAGTAATAATTTTTAATGAATTTTGAGAATT
TTTATTTTTTATATAAATATTTGTTCGTTTATTTGGACANCATACAAGTA
ATAATTTTTAATGAATTTTGAGAATTTTTATTTTTTATATAAATATTTGT
TCGTTTATTTGGACACACTGTATGCAAAAACGGAAATATAAATCGGTATG
AAGAAAAACCTCATTATCAATGGTATCCTTAGGATCTGTAGTATATTCTC
TGGACACAAGAAATTTTTTTTCAGGAGGATTGCGCCCTCTGAAGCTGACG
AAGAAGCAAAAGAAGAAGCCTACGTAGAAACAGTGAAAATGATTCTTCAA
AGTGATAATGAAGAAGATGAAGATGAAAAACATGGCAAGAAAAAAAGTCT
GTCTCAAACAATCAAATCTTCCAGATTTTATAAAGTTATTACGTGAGTAC
AAATGTGTTTTTTGCTAGCCATAATTAGGCTCAGAATTGGATCTTAAAAC
AATGGGGTTTAAAAATAGGGGTATTTAAGCAAAAATGGACACTGTGTATG
TGCGTGCCTTAAGGGTTGGGTTATCACCCTCCCAAAGTCTCTCTAAGGGT
TACCAAAACAACAAAAACTAACAACAGTCTCTCTAAGGGGTCGTTTCTTT
TTACAAACTCAAGTTAAAAGAGAGTGAAAAGTCAAGAAAGTAAGAAAGTT
TTTCGAAAGTATTGGAGAATTTATTTTGGAAATCGAAGAAATCTTTATGA
AAACGTCTCTCTTATGGTCACCTTTTTAACAATTTTTCACGACGCAATTA
TAAAAGCTCCCTTACGAAAATTATGTTTAAAGTCAGTTCGCTTTAAGTGT
GAACTTTTATTTACTATACCATGTGGTAATTAGTGTTTTCTACATTGTAG
CAGGGTGGTAGCAAAAAAAGAGTGCGAAGGACTTAAAGGTTTTCTACGGG
AATAAAATGGGCTTATTTTAAGCAGTGTCTTCATGCCGAGGCAGATAAAT
TAAAGCTACTTTTTTACACAACGATATCCTGCAAACAAGCGAAAGATCGA
CATGTTTTTGTATATTGTTGCGTAAATAAGTAGCTTTTTATTTATCTGAC
TCATCATGAAGACACTTCAAATTCTGTCGCTTCCTTTTACCCCCAAATAT
TATCTCTATTTCTTGTTCATTAAAACGAGTTAAGAAAGTAATGTTTTGAT
CTTATATGTAGGGATACAAATTTTCTCGTATGCGCATCATCTTATTCCCT
GTTTGGTTTCACTGCTACTGGCTTCAATCAACTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022331XLOC_022331Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037574-exon-sc0001656-1575043694:44218..44267TCONS_00037574-exon-sc0001656-1575043694:44218..44267Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1575043694:43857..43965TCONS_00037574-exon-sc0001656-1575043694:43857..43965Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1575043694:43026..43193TCONS_00037574-exon-sc0001656-1575043694:43026..43193Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1575043694:42183..42256TCONS_00037574-exon-sc0001656-1575043694:42183..42256Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1510915933:44218..44267TCONS_00037574-exon-sc0001656-1510915933:44218..44267Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1510915933:43857..43965TCONS_00037574-exon-sc0001656-1510915933:43857..43965Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1510915933:43026..43193TCONS_00037574-exon-sc0001656-1510915933:43026..43193Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1510915933:42183..42256TCONS_00037574-exon-sc0001656-1510915933:42183..42256Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1491911889:44218..44267TCONS_00037574-exon-sc0001656-1491911889:44218..44267Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1491911889:43857..43965TCONS_00037574-exon-sc0001656-1491911889:43857..43965Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1491911889:43026..43193TCONS_00037574-exon-sc0001656-1491911889:43026..43193Clytia hemisphaericaexon
TCONS_00037574-exon-sc0001656-1491911889:42183..42256TCONS_00037574-exon-sc0001656-1491911889:42183..42256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001656supercontigsc0001656:42183..44267 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.41946	2.78264	5.07172	4.057	0	0	0.322322	0.426401	2.37715	2.192	1.31045	3.93442	4.42042	4.00288	2.45604	1.85355	1.53319	2.21476	4.19207	6.33186	1.69505	1.45524	2.38752	1.68676	0	0	0	0.352046	0.719205	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037574 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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