TCONS_00037571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037571
Unique NameTCONS_00037571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037571 ID=TCONS_00037571|Name=TCONS_00037571|organism=Clytia hemisphaerica|type=transcript|length=2591bp
AGCTGTttctttttggactttttggaATCATAAAGAAGTTTCCTGGTAAA
GGATTTATTGTTACCTTTAAAGCATTGTTCTCCTTTGATCTTACAGTAGC
TccgtttttctgattttcaggAATTAGAAAATCggaaatattttccaaat
atgGAATGTAAAAATACTTTTTACCAAAATTCAGAAAATCAGTTTGTGAG
TCTCACgcccaatgcgtgagagttggcacatGTCACCCCCTCCTCTAATT
AAAAAAACCTGATGTGAACTTAATTTCACATTGCATTTATTTCAGGCAAA
TTATCAAATTATTGTGTTATAGAAGATGACGATCACTATAGTAGTGTCTC
AACAAAAGTCTATTGCTCTATCCCAAAAAGATGTGTCAACATTGAAAGAT
CTGAaggaacaaattaaaaatgagaTTGGCATACCTGAACATTTACAAAT
ACTTGTTAACAAAGATCATCTGGTTTTGTCAGATAGGGGATTTAAAGAAT
TGCTGCAACAGGGAAAAGATGATATATCTCTGAAATTTTTTGTTAAGGGT
TCTGATGATCTGGAAATAGGTGCTATTTGTAAGGAAATTGGTATCAATAG
TGAGATCGAGGAGGTTCATATCCATGTCTTCACCTCACGACAATCTATCC
TTGATAGTGTCCAAGTTTCTCTTGGAAGTAAAGTTTCTGATATCAAGAAC
CAACTTGATGAAGAGTATGCAATGAACAAGGAGTCGTTTTTCCTTTACCA
TGATCATCATGAAGATTTTGACGAAATTGAGGAATTACCTTTGAAACCTA
TAGAAGACGATTCATTCCTGGTTGATCTCTTTTTCAAGGGTGGGGAATTT
TATGCGGGTGCAAGTGTTCAGGTAATGTTTAAAGACAACGAAGATGATCA
TTGGGCAAGTATGAGGGACACACTGACTATTCCTGGAATACGCCTGAAAA
ACTTATCTGATAATACCGTAGTACTTGAATTTGATGGTCATGATATTATT
GATACACTTACATTGAAGAGAAAGGtaaatgaaaaattgggaaTTCCTAT
TGAATTGCAAGTCTTTTATTTGGATGATttctttttggaagaatgtcaTT
TGATGTACAAGTTTTCATCCTATTGTGATAGTTTGATCAATGGgtttttt
gaaatcaattttttcatctttccaaCAGAAGATACCCTGGTTCAAAAAAT
CTGcacaaaaaataacattttcgttTTTGATCCTCTTCCTGTTATTAGTG
GGAATGGTACGCTATTTGATTACAGTTTCGGATTGAATTCAACTGTTGAA
GATTTGTTTTTGTGTATCGCCAAAGAACTTGGAATTCCCGCACCTCATTT
TGTTCTCATAGCTCATGGTCAGGAACTTAGAAGTATGGATACAAAGATTG
CTAATATCTTTGATATCACGGatcaagaatatttttataGTAAAAGAATT
ATCCTTAAAAATGTTGGCATATATATAGCAGTGAAGGGACTGTCGGAGAA
TTTGATGAATGAATTATATTTGAGCAAGGGTATCAAAGCTTTGAAAACCG
TCACAGTGTATTACCACAACAAAAGCACCCTTGTTGAGAAGTATTCTGTT
TCTGATATCCCAACTCTTGATGAGTTGAGCATGAAGTTACGTGCTCATTT
TGGTTTTTTCCCTCCTGTTCTGTTTTTCAAGAACGATTATTTGAAGGATC
AAAGTCTGTTTCATTGGAAAAAATCATTGGCATCCTTGTTTTTTGATGAG
GAAACAAAATGCTACAACGAAAATATTGATATCTTTGTTTGTCTTAACAT
GGCCAGTGTTTTGGTTGGTGATGATGATATTGCAATTGTTAATGCCTTTT
GTTCCAAACACAAAGTTAATTACCTTCAAAGAGTTGTTgttcattttgaa
aatcaagaaaCGAAAGAGCTGAAAGTTAGGGATGGATTAGAGACTATTgg
caaaattaaagatttaatcGACAAACTTGATTTGTCTCGTAAAGGATCTT
TTGTTCACAATGGTACGAATTATTATGGTAGAGGAAAAAGGTTGCTtgag
atttattttgaaaaagaagattccTCTTCGGACTCACTGGTGTTCAAATA
CACACCCCCAGTCTGCTGAATGGACACCACCTACataggaaaaaatcatc
aaaccACTCGTCAAATCACACGCGTGTGAAATTCAATAATCATAAATTAT
GAGAATGCTATTTCCCACGCCaatcacacgcatgtgattttgaaaacttt
cagaCGAGTGGGAAATACTAAAAACTCAAACATATTTTTCTGAACTGTGA
AATTTGAAATCACATGCGTGAAATCAAGTATCCAAAAAAGTTTACTTTAA
CCACACACGCTTGTGTTTTGCTATTTCACAAATGTGAAATCGAGTATCCC
AAAAGATTTTGGTCAAACGCACACtcatatgttttgttttttccccAAAT
GTGAAATTAAGTATCGCAAAAGATTTTTGTTCCAATTATGTAAAATAAAG
AgactttgatttattatttagaaCTTTAAATGAATAATCAGGTGGTTTGG
GATATTTGGGATATGTGGAATCCTTCGTCCATTCTTCGTCC
Run BLAST on NCBI

transcript from alignment at sc0001656:9558..12264-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037571 ID=TCONS_00037571|Name=TCONS_00037571|organism=Clytia hemisphaerica|type=transcript|length=2707bp|location=Sequence derived from alignment at sc0001656:9558..12264- (Clytia hemisphaerica)
AGCTGTTTCTTTTTGGACTTTTTGGAATCATAAAGAAGTTTCCTGGTAAA
GGATTTATTGTTACCTTTAAAGCATTGTTCTCCTTTGATCTTACAGTAGC
TCCGTTTTTCTGATTTTCAGGAATTAGAAAATCGGAAATATTTTCCAAAT
ATGGAATGTAAAAATACTTTTTACCAAAATTCAGAAAATCAGTTTGTGAG
TCTCACGCCCAATGCGTGAGAGTTGGCACATGTCACCCCCTCCTCTAATT
AAAAAAACCTGATGTGAACTTAATTTCACATTGCATTTATTTCAGGCAAA
TTATCAAATTATTGTGTTATAGAAGATGACGATCACTATAGTAGTGTCTC
AACAAAAGTCTATTGCTCTATCCCAAAAAGATGTGTCAACATTGAAAGAT
CTGAAGGAACAAATTAAAAATGAGATTGGCATACCTGAACATTTACAAAT
ACTTGTTAACAAAGATCATCTGGTTTTGTCAGATAGGGGATTTAAAGAAT
TGCTGCAACAGGGAAAAGATGATATATCTCTGAAATTTTTTGTTAAGGGT
TCTGATGATCTGGAAATAGGTGCTATTTGTAAGGAAATTGGTATCAATAG
TGAGATCGAGGAGGTTCATATCCATGTCTTCACCTCACGACAATCTATCC
TTGATAGTGTCCAAGTTTCTCTTGGAAGTAAAGTTTCTGATATCAAGAAC
CAACTTGATGAAGAGTATGCAATGAACAAGGAGTCGTTTTTCCTTTACCA
TGATCATCATGAAGATTTTGACGAAATTGAGGAATTACCTTTGAAACCTA
TAGAAGACGATTCATTCCTGGTTGATCTCTTTTTCAAGGGTGGGGAATTT
TATGCGGGTGCAAGTGTTCAGGTAATGTTTAAAGACAACGAAGATGATCA
TTGGGCAAGTATGAGGGACACACTGACTATTCCTGGAATACGCCTGAAAA
ACTTATCTGATAATACCGTAGTACTTGAATTTGATGGTCATGATATTATT
GATACACTTACATTGAAGAGAAAGGTAAATGAAAAATTGGGAATTCCTAT
TGAATTGCAAGTCTTTTATTTGGATGATTTCTTTTTGGAAGAATGTCATT
TGATGTACAAGTTTTCATCCTATTGTGATAGTTTGATCAATGGGTTTTTT
GAAATCAATTTTTTCATCTTTCCAACAGAAGATACCCTGGTTCAAAAAAT
CTGCACAAAAAATAACATTTTCGTTTTTGATCCTCTTCCTGTTATTAGTG
GGAATGGTACGCTATTTGATTACAGTTTCGGATTGAATTCAACTGTTGAA
GATTTGTTTTTGTGTATCGCCAAAGAACTTGGAATTCCCGCACCTCATTT
TGTTCTCATAGCTCATGGTCAGGAACTTAGAAGTATGGATACAAAGATTG
CTAATATCTTTGATATCACGGATCAAGAATATTTTTATAGTAAAAGAATT
ATCCTTAAAAATGTTGGCATATATATAGCAGTGAAGGGACTGTCGGAGAA
TTTGATGAATGAATTATATTTGAGCAAGGGTATCAAAGCTTTGAAAACCG
TCACAGTGTATTACCACAACAAAAGCACCCTTGTTGAGAAGTATTCTGTT
TCTGATATCCCAACTCTTGATGAGTTGAGCATGAAGTTACGTGCTCATTT
TGGTTTTTTCCCTCCTGTTCTGTTTTTCAAGAACGATTATTTGAAGGATC
AAAGTCTGTTTCATTGGAAAAAATCATTGGCATCCTTGTTTTTTGATGAG
GAAACAAAATGCTACAACGAAAATATTGATATCTTTGTTTGTCTTAACAT
GGCCAGTGTTTTGGTTGGTGATGATGATATTGCAATTGTTAATGCCTTTT
GTTCCAAACACAAAGTTAATTACCTTCAAAGAGTTGTTGTTCATTTTGAA
AATCAAGAAACGAAAGAGCTGAAAGTTAGGGATGGATTAGAGACTATTGG
CAAAATTAAAGATTTAATCGACAAACTTGATTTGTCTCGTAAAGGATCTT
TTGTTCACAATGGTACGAATTATTATGGTAGAGGAAAAAGGTTGCTTGAG
ATTTATTTTGAAAAAGAAGATTCCTCTTCGGACTCACTGGTGTTCAAATA
CACACCCCCAGTCTGCTGAATGGACACCACCTACATAGGAAAAAATCATC
AAACCACTCGTCAAATCACACGCGTGTGAAATTCAATAATCATAAATTAT
GAGAATGCTATTTCCCACGCCAATCACACGCATGTGATTTTGAAAACTTT
CAGACGAGTGGGAAATACTAAAAACTCAAACATATTTTTCTGAACTGTGA
AATTTGAAATCACATGCGTGAAATCAAGTATCCNATCACACGCATGTGAT
TTTGCAAACTTTCAGACGAGTGGGAAATACCCAAAAAATAAACCCAAACA
TTTTTCTGAACTGTGAAATTTGAAATCACATGCGTGAAATCAAGTATCCA
AAAAAGTTTACTTTAACCACACACGCTTGTGTTTTGCTATTTCACAAATG
TGAAATCGAGTATCCCAAAAGATTTTGGTCAAACGCACACTCATATGTTT
TGTTTTTTCCCCAAATGTGAAATTAAGTATCGCAAAAGATTTTTGTTCCA
ATTATGTAAAATAAAGAGACTTTGATTTATTATTTAGAACTTTAAATGAA
TAATCAGGTGGTTTGGGATATTTGGGATATGTGGAATCCTTCGTCCATTC
TTCGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022329XLOC_022329Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037571-exon-sc0001656-1575043694:9982..12264TCONS_00037571-exon-sc0001656-1575043694:9982..12264Clytia hemisphaericaexon
TCONS_00037571-exon-sc0001656-1575043694:9558..9865TCONS_00037571-exon-sc0001656-1575043694:9558..9865Clytia hemisphaericaexon
TCONS_00037571-exon-sc0001656-1510915933:9982..12264TCONS_00037571-exon-sc0001656-1510915933:9982..12264Clytia hemisphaericaexon
TCONS_00037571-exon-sc0001656-1510915933:9558..9865TCONS_00037571-exon-sc0001656-1510915933:9558..9865Clytia hemisphaericaexon
TCONS_00037571-exon-sc0001656-1491911889:9982..12264TCONS_00037571-exon-sc0001656-1491911889:9982..12264Clytia hemisphaericaexon
TCONS_00037571-exon-sc0001656-1491911889:9558..9865TCONS_00037571-exon-sc0001656-1491911889:9558..9865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001656supercontigsc0001656:9558..12264 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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