TCONS_00037567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037567
Unique NameTCONS_00037567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037567 ID=TCONS_00037567|Name=TCONS_00037567|organism=Clytia hemisphaerica|type=transcript|length=572bp
AAGATTTCATATAAATCTGTTAAAAGCTTAATGATATCTACTTGTTGAAA
TAGAGCATGTGAGCATTTGAAAGATGGCATATTCAAATCTTGGAAATAGA
CTTTAACCCAGATTCACGATTCAATGCATATTCTTCAAAACCACAAGCAA
AGTCGTAAAACACAATTTCAGGAGGAATTTTCAAATGTGTATACAAAGAG
GACATCGCATCCTTTCTCCCCTCACTCCCATTGAATATGTGCCCTCCGTA
ACAGTGCCCGTGGGCAGGGCAGAACCAGAGAAATAAAAAAGACGCCCCTC
TCTTGGCGATGTTAGGGCCGTACTTTTTCGAACATTTGGTTTGCGCATCA
TCATCGTCACCGAAATTTCGATTTAGACGTACCTGTACTCCATCTCGGTG
GAAGTAGTTAAACCTGCCAAGTTTTGGAGGGTTGTACGAATCCACGATCT
CGATTGCTTCTCCCACGCTTGGATCCGATGATTCCAACGACGATTTTTGT
TCCAGGAGATATACCAGAAAAGGCTTTGGCGTCACcattagcctgggaat
ccatgctatgatttcttctttg
Run BLAST on NCBI

protein sequence of TCONS_00037567-protein

>TCONS_00037567-protein ID=TCONS_00037567-protein|Name=TCONS_00037567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
KEEIIAWIPRLMVTPKPFLVYLLEQKSSLESSDPSVGEAIEIVDSYNPPK
LGRFNYFHRDGVQVRLNRNFGDDDDAQTKCSKKYGPNIAKRGASFLFLWF
CPAHGHCYGGHIFNGSEGRKDAMSSLYTHLKIPPEIVFYDFACGFEEYAL
NRESGLKSISKI
Run BLAST on NCBI

transcript from alignment at sc0001655:42777..43348

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037567 ID=TCONS_00037567|Name=TCONS_00037567|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at sc0001655:42777..43348 (Clytia hemisphaerica)
caaagaagaaatcatagcatggattcccaggctaatgGTGACGCCAAAGC
CTTTTCTGGTATATCTCCTGGAACAAAAATCGTCGTTGGAATCATCGGAT
CCAAGCGTGGGAGAAGCAATCGAGATCGTGGATTCGTACAACCCTCCAAA
ACTTGGCAGGTTTAACTACTTCCACCGAGATGGAGTACAGGTACGTCTAA
ATCGAAATTTCGGTGACGATGATGATGCGCAAACCAAATGTTCGAAAAAG
TACGGCCCTAACATCGCCAAGAGAGGGGCGTCTTTTTTATTTCTCTGGTT
CTGCCCTGCCCACGGGCACTGTTACGGAGGGCACATATTCAATGGGAGTG
AGGGGAGAAAGGATGCGATGTCCTCTTTGTATACACATTTGAAAATTCCT
CCTGAAATTGTGTTTTACGACTTTGCTTGTGGTTTTGAAGAATATGCATT
GAATCGTGAATCTGGGTTAAAGTCTATTTCCAAGATTTGAATATGCCATC
TTTCAAATGCTCACATGCTCTATTTCAACAAGTAGATATCATTAAGCTTT
TAACAGATTTATATGAAATCTT

Coding sequence (CDS) from alignment at sc0001655:42777..43348

>TCONS_00037567 ID=TCONS_00037567|Name=TCONS_00037567|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0001655:42777..43348 (Clytia hemisphaerica)
aaagaagaaatcatagcatggattcccaggctaatgGTGACGCCAAAGCC
TTTTCTGGTATATCTCCTGGAACAAAAATCGTCGTTGGAATCATCGGATC
CAAGCGTGGGAGAAGCAATCGAGATCGTGGATTCGTACAACCCTCCAAAA
CTTGGCAGGTTTAACTACTTCCACCGAGATGGAGTACAGGTACGTCTAAA
TCGAAATTTCGGTGACGATGATGATGCGCAAACCAAATGTTCGAAAAAGT
ACGGCCCTAACATCGCCAAGAGAGGGGCGTCTTTTTTATTTCTCTGGTTC
TGCCCTGCCCACGGGCACTGTTACGGAGGGCACATATTCAATGGGAGTGA
GGGGAGAAAGGATGCGATGTCCTCTTTGTATACACATTTGAAAATTCCTC
CTGAAATTGTGTTTTACGACTTTGCTTGTGGTTTTGAAGAATATGCATTG
AATCGTGAATCTGGGTTAAAGTCTATTTCCAAGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022327XLOC_022327Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037567-proteinTCONS_00037567-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037567-exon-sc0001655-1491911889:42777..43348TCONS_00037567-exon-sc0001655-1491911889:42777..43348Clytia hemisphaericaexon
TCONS_00037567-exon-sc0001655-1510915933:42777..43348TCONS_00037567-exon-sc0001655-1510915933:42777..43348Clytia hemisphaericaexon
TCONS_00037567-exon-sc0001655-1575043694:42777..43348TCONS_00037567-exon-sc0001655-1575043694:42777..43348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001655supercontigsc0001655:42777..43348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.07508	1.34299	0.221321	0.441117	0.659004	0.833207	1.13088	1.64689	0.411796	1.12389	1.48528	0.455636	1.10501	0.337518	0.666822	1.90797	1.55415	1.05427	0.623366	0.434872	0.661469	0.414825	0.672365	0.916916	2.09867	2.90317	0	0	0.108478	0.110522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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