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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037563 ID=TCONS_00037563|Name=TCONS_00037563|organism=Clytia hemisphaerica|type=transcript|length=1098bp
ATTCAGAGCCGATATTTCTTCGTTTCACTTTCAAATGTAAACCGTTAGTA
GACGTGTTTACTCCTTGGAAAGTTTGTTCAATCTCAGATTcattttgaag
tgaaaaaatctcaaaattcttCACGCAATGAAACAATGCTATCTTTAACT
CCATCATTGCGAACCGTTGCCCGACACAATTTCGTGGCCCGGCTGagaat
ggtataaacatgaaagccTTGTCTTTTTTCCTTTCATCAAATTTCTCAAA
TCTTTCAGGAATGAAAGACATCGGGTTGTCCCAATTTTCTTCATTATGGT
TAAGGTTTCGGACATCAACTAACAGCATACATTCTGGAAAAATTTTACCA
CCAAGTATGGTTCCTTCCTTGATATCCCTTGAAAAAACGTTTAAGATGAC
ATGCAACCGTAATGTTTCTTTAATGACTAAATCCAAGTAAGCCATTCTTT
TTAAATCATCGAAAttgaaattctcatttttaccAAATTCCGAAATCTCT
TCGTAGAGTTTAGCCTGACATTCAGGATTACGACCTAAACAATAGAGAGA
AAAAGCAAAACTTGATGAAGTACTGTCGTAACCTGCAAAAAGTAATGTCG
TAACTTCATCAACCATACCCTCGATGCCGATTTCTCCTTTCTCGTAAGCG
TCTAATAAAACGTCAATCACAATCTTTCGTTTCGGCTGACGTAAACTTTG
ATCACCTGCTTCATTTTTACGGAACCGGATTCTTTCTTCAATGATAGATG
TAACCCAGTTTCTTAACGCATCACGTTGGCTAAAGAATGTTTTACCATCT
TGGGTTAATGAATAGATAAAATCATTCATCAGCCAAGGTCTATAGACTCG
CTTAGACACTAAATTTGTAGCATTTCCGaacaaagaattgaaatcactAT
CATGACTTTCCTTGGTTAAAGATATTTTGTAACCCATCGAAGTCTCACAA
ATAACAGCCATCGTTAACTTTGTTCCCATATTAATCGCATTAAAAGAAGT
TTCCTCGCAAGCATGCTTGCCTAAAATTTGGATTAATTCCTTACTGCATC
GTTCCATTACTGGGAGAAAACCATTTAGAATATCGAAATGAAAAGCTG Run BLAST on NCBI protein sequence of TCONS_00037563-protein >TCONS_00037563-protein ID=TCONS_00037563-protein|Name=TCONS_00037563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
AFHFDILNGFLPVMERCSKELIQILGKHACEETSFNAINMGTKLTMAVIC
ETSMGYKISLTKESHDSDFNSLFGNATNLVSKRVYRPWLMNDFIYSLTQD
GKTFFSQRDALRNWVTSIIEERIRFRKNEAGDQSLRQPKRKIVIDVLLDA
YEKGEIGIEGMVDEVTTLLFAGYDSTSSSFAFSLYCLGRNPECQAKLYEE
ISEFGKNENFNFDDLKRMAYLDLVIKETLRLHVILNVFSRDIKEGTILGG
KIFPECMLLVDVRNLNHNEENWDNPMSFIPERFEKFDERKKDKAFMFIPF
SAGPRNCVGQRFAMMELKIALFHCVKNFEIFSLQNESEIEQTFQGVNTST
NGLHLKVKRRNIGSE Run BLAST on NCBI transcript from alignment at sc0001655:3885..4982 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037563 ID=TCONS_00037563|Name=TCONS_00037563|organism=Clytia hemisphaerica|type=transcript|length=1098bp|location=Sequence derived from alignment at sc0001655:3885..4982 (Clytia hemisphaerica)
CAGCTTTTCATTTCGATATTCTAAATGGTTTTCTCCCAGTAATGGAACGA
TGCAGTAAGGAATTAATCCAAATTTTAGGCAAGCATGCTTGCGAGGAAAC
TTCTTTTAATGCGATTAATATGGGAACAAAGTTAACGATGGCTGTTATTT
GTGAGACTTCGATGGGTTACAAAATATCTTTAACCAAGGAAAGTCATGAT
agtgatttcaattctttgttCGGAAATGCTACAAATTTAGTGTCTAAGCG
AGTCTATAGACCTTGGCTGATGAATGATTTTATCTATTCATTAACCCAAG
ATGGTAAAACATTCTTTAGCCAACGTGATGCGTTAAGAAACTGGGTTACA
TCTATCATTGAAGAAAGAATCCGGTTCCGTAAAAATGAAGCAGGTGATCA
AAGTTTACGTCAGCCGAAACGAAAGATTGTGATTGACGTTTTATTAGACG
CTTACGAGAAAGGAGAAATCGGCATCGAGGGTATGGTTGATGAAGTTACG
ACATTACTTTTTGCAGGTTACGACAGTACTTCATCAAGTTTTGCTTTTTC
TCTCTATTGTTTAGGTCGTAATCCTGAATGTCAGGCTAAACTCTACGAAG
AGATTTCGGAATTTggtaaaaatgagaatttcaaTTTCGATGATTTAAAA
AGAATGGCTTACTTGGATTTAGTCATTAAAGAAACATTACGGTTGCATGT
CATCTTAAACGTTTTTTCAAGGGATATCAAGGAAGGAACCATACTTGGTG
GTAAAATTTTTCCAGAATGTATGCTGTTAGTTGATGTCCGAAACCTTAAC
CATAATGAAGAAAATTGGGACAACCCGATGTCTTTCATTCCTGAAAGATT
TGAGAAATTTGATGAAAGGAAAAAAGACAAggctttcatgtttataccat
tctCAGCCGGGCCACGAAATTGTGTCGGGCAACGGTTCGCAATGATGGAG
TTAAAGATAGCATTGTTTCATTGCGTGaagaattttgagattttttcact
tcaaaatgAATCTGAGATTGAACAAACTTTCCAAGGAGTAAACACGTCTA
CTAACGGTTTACATTTGAAAGTGAAACGAAGAAATATCGGCTCTGAAT Coding sequence (CDS) from alignment at sc0001655:3885..4982 >TCONS_00037563 ID=TCONS_00037563|Name=TCONS_00037563|organism=Clytia hemisphaerica|type=CDS|length=1095bp|location=Sequence derived from alignment at sc0001655:3885..4982 (Clytia hemisphaerica)
GCTTTTCATTTCGATATTCTAAATGGTTTTCTCCCAGTAATGGAACGATG
CAGTAAGGAATTAATCCAAATTTTAGGCAAGCATGCTTGCGAGGAAACTT
CTTTTAATGCGATTAATATGGGAACAAAGTTAACGATGGCTGTTATTTGT
GAGACTTCGATGGGTTACAAAATATCTTTAACCAAGGAAAGTCATGATag
tgatttcaattctttgttCGGAAATGCTACAAATTTAGTGTCTAAGCGAG
TCTATAGACCTTGGCTGATGAATGATTTTATCTATTCATTAACCCAAGAT
GGTAAAACATTCTTTAGCCAACGTGATGCGTTAAGAAACTGGGTTACATC
TATCATTGAAGAAAGAATCCGGTTCCGTAAAAATGAAGCAGGTGATCAAA
GTTTACGTCAGCCGAAACGAAAGATTGTGATTGACGTTTTATTAGACGCT
TACGAGAAAGGAGAAATCGGCATCGAGGGTATGGTTGATGAAGTTACGAC
ATTACTTTTTGCAGGTTACGACAGTACTTCATCAAGTTTTGCTTTTTCTC
TCTATTGTTTAGGTCGTAATCCTGAATGTCAGGCTAAACTCTACGAAGAG
ATTTCGGAATTTggtaaaaatgagaatttcaaTTTCGATGATTTAAAAAG
AATGGCTTACTTGGATTTAGTCATTAAAGAAACATTACGGTTGCATGTCA
TCTTAAACGTTTTTTCAAGGGATATCAAGGAAGGAACCATACTTGGTGGT
AAAATTTTTCCAGAATGTATGCTGTTAGTTGATGTCCGAAACCTTAACCA
TAATGAAGAAAATTGGGACAACCCGATGTCTTTCATTCCTGAAAGATTTG
AGAAATTTGATGAAAGGAAAAAAGACAAggctttcatgtttataccattc
tCAGCCGGGCCACGAAATTGTGTCGGGCAACGGTTCGCAATGATGGAGTT
AAAGATAGCATTGTTTCATTGCGTGaagaattttgagattttttcacttc
aaaatgAATCTGAGATTGAACAAACTTTCCAAGGAGTAAACACGTCTACT
AACGGTTTACATTTGAAAGTGAAACGAAGAAATATCGGCTCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037563-exon-sc0001655-1491911889:3885..4982 | TCONS_00037563-exon-sc0001655-1491911889:3885..4982 | Clytia hemisphaerica | exon |
| TCONS_00037563-exon-sc0001655-1510915933:3885..4982 | TCONS_00037563-exon-sc0001655-1510915933:3885..4982 | Clytia hemisphaerica | exon |
| TCONS_00037563-exon-sc0001655-1575043694:3885..4982 | TCONS_00037563-exon-sc0001655-1575043694:3885..4982 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001655 | supercontig | sc0001655:3885..4982 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00037563 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 191.045 bits (484), Expect = 6.839e-55 Identity = 127/373 (34.05%), Postives = 201/373 (53.89%), Query Frame = -3
Query: 14 AFHFDILNGFLPVMERCSKELIQILGKHACEETSFNAINMGTKLTMAVICETSMGYKISLTKESHDSDFNSLFGNATNLVSKRVYRPWLMNDFIYSLTQDGKTFFSQRDALRNWVTSIIEERI-RFRKNE--AGDQSLRQP---KRKIVIDVLLDAY--EKGEIGIEGMVDEVTTLLFAGYDSTSSSFAFSLYCLGRNPECQAKLYEEISE-FGKNEN-FNFDDLKRMAYLDLVIKETLRLHVILNVFSRDIKEGT-ILGGKIFPECMLLVDVRNLNHNEENWDNPMSFIPERFEKFDERKKDK-AFMFIPFSAGPRNCVGQRFAMMELKIALFHCVKNFEIFSLQNESEIEQTFQGVNTSTNGLHLKVKRRN 1096
FHF IL FL +M + L++ L KH +E +FN T + +ICET+MG I + + DS++ + ++ +R+ PWL D Y + ++G L + S+I ER NE GD P KR+ +D+LL E + E + +EV T +F G+D+T+++ +SLY LG NPE Q K+ E+ + FGK++ +DLK++ YL+ VIKETLRL + +F+R + E + G ++ ++ L+ + + NP F PERF F E + + + ++PFSAGPRNC+GQ+FA+ME K L +++F I S Q E+ Q + +NG+ +K+KRRN
Sbjct: 153 TFHFTILEDFLDIMNEQANILVKKLEKHINQE-AFNCFFYITLCALDIICETAMGKNIG-AQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF--FPENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRRN 521
The following BLAST results are available for this feature:
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