TCONS_00037562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037562
Unique NameTCONS_00037562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037562 ID=TCONS_00037562|Name=TCONS_00037562|organism=Clytia hemisphaerica|type=transcript|length=677bp
tggcggattttggcgaaatccgccaaatccgccaaattttctttccgcca
aaatttcttcctttaaggtaatctgtggggttcgactgcgactacaatct
atgctctgagctattggaggaaatatttaaccacatctttgtggctcttg
tttaTTATATTTTGGACTACTCAATAAATCCTCAATGACACTTTGGTTGG
AAGTTACAACTAATATTCTAGTTGCTAAATAATAACCAAATGTTCCTTCA
TATTGCTTATGAAATTCATCACTCATTTTCATAAACTTCTGTTGATCTAA
TAGGGCTGGTNTGTTACAACTAATATTCTAGTTGCTAAATAATAACCAAA
TGTTCCTTCATATTGCTTATGAAATTCATCACTCATTTTCATAAACTTCT
GTTGATCTAATAGGGCTGGTAAGTGACCAACCAGTGGCCAATCCCCAGGG
ATGATATCAACAGTACATTGACCTTTACGTGTGTAATATTTCCACCATGC
AAAAACGAGGGtcaatattccaacaaaaattGTTACCAGCCATATGAGGC
AAACCATCGTGCTTTGTAACTACTAAGAGACTTgctaagaaagaaagaaa
atgaaacgtCAAAATAATATGATTCTCTCAGcaacaaaaattagaaaaca
atttataaaaATCAGGTATCTTTCAGT
Run BLAST on NCBI

transcript from alignment at sc0001655:480..1156

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037562 ID=TCONS_00037562|Name=TCONS_00037562|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at sc0001655:480..1156 (Clytia hemisphaerica)
ACTGAAAGATACCTGATttttataaattgttttctaatttttgttgCTGA
GAGAATCATATTATTTTGacgtttcattttctttctttcttagcAAGTCT
CTTAGTAGTTACAAAGCACGATGGTTTGCCTCATATGGCTGGTAACaatt
tttgttggaatattgaCCCTCGTTTTTGCATGGTGGAAATATTACACACG
TAAAGGTCAATGTACTGTTGATATCATCCCTGGGGATTGGCCACTGGTTG
GTCACTTACCAGCCCTATTAGATCAACAGAAGTTTATGAAAATGAGTGAT
GAATTTCATAAGCAATATGAAGGAACATTTGGTTATTATTTAGCAACTAG
AATATTAGTTGTAACANACCAGCCCTATTAGATCAACAGAAGTTTATGAA
AATGAGTGATGAATTTCATAAGCAATATGAAGGAACATTTGGTTATTATT
TAGCAACTAGAATATTAGTTGTAACTTCCAACCAAAGTGTCATTGAGGAT
TTATTGAGTAGTCCAAAATATAAtaaacaagagccacaaagatgtggtta
aatatttcctccaatagctcagagcatagattgtagtcgcagtcgaaccc
cacagattaccttaaaggaagaaattttggcggaaagaaaatttggcgga
tttggcggatttcgccaaaatccgcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022322XLOC_022322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037562-exon-sc0001655-1491911889:480..1156TCONS_00037562-exon-sc0001655-1491911889:480..1156Clytia hemisphaericaexon
TCONS_00037562-exon-sc0001655-1510915933:480..1156TCONS_00037562-exon-sc0001655-1510915933:480..1156Clytia hemisphaericaexon
TCONS_00037562-exon-sc0001655-1575043694:480..1156TCONS_00037562-exon-sc0001655-1575043694:480..1156Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001655supercontigsc0001655:480..1156 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.108315	0	0.24109	0.632439	3.14784	2.93196	5.04422	5.51063	2.22037	1.30229	2.28279	0.915627	1.87411	2.07896	2.77784	4.04936	0.971976	1.15853	2.74775	4.35517	0.359373	0.277522	0.241176	0.654565	0.947826	0.500393	0.56415	0	2.10303	1.58015
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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