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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037556 ID=TCONS_00037556|Name=TCONS_00037556|organism=Clytia hemisphaerica|type=transcript|length=1605bp
CGAATGAGTAGTTATTTGTATCCAGCTCAAAGCCAAAAAGATTCTTATTT
TGTATTGTTCATTTCCTGATAAAAATGCTGATAGTAGTAACTTTAAGGTG
AATAATCTTTCAACAAAAATCTAAACCTCCACTTTCAATACTGACTTAAA
AACACGttcatgaaaaaaagaaattgtggATCAATcagattctaaaatat
ttggGAAATGTGCAATATGGGTACCCATGTTAATGCATTGTTCGCCAATA
TCTTCGATAGCAATTACACTCAACTTATcatcttttttaacatttttaac
cATGGTCATAGGCAGTTCATtagatttcaaacattttttgaatacaGATA
ACGAATCATGGTCTAATTCCTCAAAATAATGACCAAAAGCCACAAAATAC
ATTTCATCCTCTGCAGTGAAACAGGCAAACCTATTGATTGAGAAATACTG
ACCATTACAAAGCATTACGGTAGTGCTTTCTCGCCTTGTTTCTTTCGTGC
ACTGACGTGATCGAATTGTAAAGCCGTTaactttgattgattgaaaagtT
TTTGTCAATTCCAAATCAAACATGCAGCGAtacttgaagaaaaaaactgt
ttgCTCTTCCTTAGAGGGTTTGTAACTTGAGAAAGATCCAATGCCATTCA
CCCTTGGGGATATCACAAACTGTGAACCATGATAGGAACCATTAAActtc
ttgataaatttttcttCCTGAGAATTTATTTGAATTGTTTCTTCCATGAG
AAGTGGTAAAAAGTTTGATGCTGAAACTGCACTGGCCAATTGGAAGCAAA
TATTTTGAGTTCCATGAATCATTTTAAGAATGTAGCCATTCTTGTCCTCA
AAGTGAAAAAGACTGTAGACAAACAAAGGACCAAGTTCTTCTACTGTTGC
TGGCAAATGCACAAGAGAATGTATGTTAATTGTTTGGTATCTTATTTTGT
ATAACCTTTCAAACAGGTAAACAAACAAACGAAGGAAACGCTTAGCCGTT
TGGATATCATTCTCAGAGATCTCTGTTTTTAAAAGCAGGTGAATTGAATG
TACAAGTAAATAAAAGTGTTGGTAGTAGGTATCTGTCAAATATCCTTTCA
TTACCGGGACAAAATAGTAGAGTAAAAAACTTCTAAATTCAGAAGCTTTC
CAATAGCTCAAAGTGCTTTTCACAGATCGGGGTGCTCGAGAGATATGATT
TGGTGGTTTGATTGCAAGAAGCCTATTCTCTACATTTTCTACATTGGAGT
GGATGGAAAAAGGTTCTTTCTTGTGGGACTTGTCGAGCCAAAGATTCAAA
CAGAGTTTCATCACTCCAAGTAGGACTCCGTGCATATAATCCACTGCAAC
TCCTTTGACAATATTGCTGGCATAATGATGGCAATAGTAAAAGCGCTGAC
GGTCCTTTAATGCCACAAATTGGTTCCTTCTTGGTAGAttctaaaacatt
ttttgcgtGCTGTACAGTCTCTATGTGTGTTCTAGATGGTCCTTCAggat
tttcaggcttaaaaggAAAACTACGAACATTACCTCCAGATTCCGTCATC
ACTGTTTCTCCTCTTTGGGTGCACTTAGGACAACCATAAAATGCATTAAA
CTGGC Run BLAST on NCBI protein sequence of TCONS_00037556-protein >TCONS_00037556-protein ID=TCONS_00037556-protein|Name=TCONS_00037556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=384bp
MHGVLLGVMKLCLNLWLDKSHKKEPFSIHSNVENVENRLLAIKPPNHISR
APRSVKSTLSYWKASEFRSFLLYYFVPVMKGYLTDTYYQHFYLLVHSIHL
LLKTEISENDIQTAKRFLRLFVYLFERLYKIRYQTINIHSLVHLPATVEE
LGPLFVYSLFHFEDKNGYILKMIHGTQNICFQLASAVSASNFLPLLMEET
IQINSQEEKFIKKFNGSYHGSQFVISPRVNGIGSFSSYKPSKEEQTVFFF
KYRCMFDLELTKTFQSIKVNGFTIRSRQCTKETRRESTTVMLCNGQYFSI
NRFACFTAEDEMYFVAFGHYFEELDHDSLSVFKKCLKSNELPMTMVKNVK
KDDKLSVIAIEDIGEQCINMGTHIAHFPNILESD Run BLAST on NCBI transcript from alignment at sc0001654:11110..12714 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037556 ID=TCONS_00037556|Name=TCONS_00037556|organism=Clytia hemisphaerica|type=transcript|length=1605bp|location=Sequence derived from alignment at sc0001654:11110..12714 (Clytia hemisphaerica)
GCCAGTTTAATGCATTTTATGGTTGTCCTAAGTGCACCCAAAGAGGAGAA
ACAGTGATGACGGAATCTGGAGGTAATGTTCGTAGTTTTccttttaagcc
tgaaaatccTGAAGGACCATCTAGAACACACATAGAGACTGTACAGCacg
caaaaaatgttttagaaTCTACCAAGAAGGAACCAATTTGTGGCATTAAA
GGACCGTCAGCGCTTTTACTATTGCCATCATTATGCCAGCAATATTGTCA
AAGGAGTTGCAGTGGATTATATGCACGGAGTCCTACTTGGAGTGATGAAA
CTCTGTTTGAATCTTTGGCTCGACAAGTCCCACAAGAAAGAACCTTTTTC
CATCCACTCCAATGTAGAAAATGTAGAGAATAGGCTTCTTGCAATCAAAC
CACCAAATCATATCTCTCGAGCACCCCGATCTGTGAAAAGCACTTTGAGC
TATTGGAAAGCTTCTGAATTTAGAAGTTTTTTACTCTACTATTTTGTCCC
GGTAATGAAAGGATATTTGACAGATACCTACTACCAACACTTTTATTTAC
TTGTACATTCAATTCACCTGCTTTTAAAAACAGAGATCTCTGAGAATGAT
ATCCAAACGGCTAAGCGTTTCCTTCGTTTGTTTGTTTACCTGTTTGAAAG
GTTATACAAAATAAGATACCAAACAATTAACATACATTCTCTTGTGCATT
TGCCAGCAACAGTAGAAGAACTTGGTCCTTTGTTTGTCTACAGTCTTTTT
CACTTTGAGGACAAGAATGGCTACATTCTTAAAATGATTCATGGAACTCA
AAATATTTGCTTCCAATTGGCCAGTGCAGTTTCAGCATCAAACTTTTTAC
CACTTCTCATGGAAGAAACAATTCAAATAAATTCTCAGGaagaaaaattt
atcaagaagTTTAATGGTTCCTATCATGGTTCACAGTTTGTGATATCCCC
AAGGGTGAATGGCATTGGATCTTTCTCAAGTTACAAACCCTCTAAGGAAG
AGcaaacagtttttttcttcaagtaTCGCTGCATGTTTGATTTGGAATTG
ACAAAAacttttcaatcaatcaaagttAACGGCTTTACAATTCGATCACG
TCAGTGCACGAAAGAAACAAGGCGAGAAAGCACTACCGTAATGCTTTGTA
ATGGTCAGTATTTCTCAATCAATAGGTTTGCCTGTTTCACTGCAGAGGAT
GAAATGTATTTTGTGGCTTTTGGTCATTATTTTGAGGAATTAGACCATGA
TTCGTTATCtgtattcaaaaaatgtttgaaatctaATGAACTGCCTATGA
CCATggttaaaaatgttaaaaaagatgATAAGTTGAGTGTAATTGCTATC
GAAGATATTGGCGAACAATGCATTAACATGGGTACCCATATTGCACATTT
CccaaatattttagaatctgATTGATccacaatttctttttttcatgaaC
GTGTTTTTAAGTCAGTATTGAAAGTGGAGGTTTAGATTTTTGTTGAAAGA
TTATTCACCTTAAAGTTACTACTATCAGCATTTTTATCAGGAAATGAACA
ATACAAAATAAGAATCTTTTTGGCTTTGAGCTGGATACAAATAACTACTC
ATTCG Coding sequence (CDS) from alignment at sc0001654:11110..12714 >TCONS_00037556 ID=TCONS_00037556|Name=TCONS_00037556|organism=Clytia hemisphaerica|type=CDS|length=1155bp|location=Sequence derived from alignment at sc0001654:11110..12714 (Clytia hemisphaerica)
ATGCACGGAGTCCTACTTGGAGTGATGAAACTCTGTTTGAATCTTTGGCT
CGACAAGTCCCACAAGAAAGAACCTTTTTCCATCCACTCCAATGTAGAAA
ATGTAGAGAATAGGCTTCTTGCAATCAAACCACCAAATCATATCTCTCGA
GCACCCCGATCTGTGAAAAGCACTTTGAGCTATTGGAAAGCTTCTGAATT
TAGAAGTTTTTTACTCTACTATTTTGTCCCGGTAATGAAAGGATATTTGA
CAGATACCTACTACCAACACTTTTATTTACTTGTACATTCAATTCACCTG
CTTTTAAAAACAGAGATCTCTGAGAATGATATCCAAACGGCTAAGCGTTT
CCTTCGTTTGTTTGTTTACCTGTTTGAAAGGTTATACAAAATAAGATACC
AAACAATTAACATACATTCTCTTGTGCATTTGCCAGCAACAGTAGAAGAA
CTTGGTCCTTTGTTTGTCTACAGTCTTTTTCACTTTGAGGACAAGAATGG
CTACATTCTTAAAATGATTCATGGAACTCAAAATATTTGCTTCCAATTGG
CCAGTGCAGTTTCAGCATCAAACTTTTTACCACTTCTCATGGAAGAAACA
ATTCAAATAAATTCTCAGGaagaaaaatttatcaagaagTTTAATGGTTC
CTATCATGGTTCACAGTTTGTGATATCCCCAAGGGTGAATGGCATTGGAT
CTTTCTCAAGTTACAAACCCTCTAAGGAAGAGcaaacagtttttttcttc
aagtaTCGCTGCATGTTTGATTTGGAATTGACAAAAacttttcaatcaat
caaagttAACGGCTTTACAATTCGATCACGTCAGTGCACGAAAGAAACAA
GGCGAGAAAGCACTACCGTAATGCTTTGTAATGGTCAGTATTTCTCAATC
AATAGGTTTGCCTGTTTCACTGCAGAGGATGAAATGTATTTTGTGGCTTT
TGGTCATTATTTTGAGGAATTAGACCATGATTCGTTATCtgtattcaaaa
aatgtttgaaatctaATGAACTGCCTATGACCATggttaaaaatgttaaa
aaagatgATAAGTTGAGTGTAATTGCTATCGAAGATATTGGCGAACAATG
CATTAACATGGGTACCCATATTGCACATTTCccaaatattttagaatctg
ATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037556-exon-sc0001654-1491911889:11110..12714 | TCONS_00037556-exon-sc0001654-1491911889:11110..12714 | Clytia hemisphaerica | exon |
| TCONS_00037556-exon-sc0001654-1510915933:11110..12714 | TCONS_00037556-exon-sc0001654-1510915933:11110..12714 | Clytia hemisphaerica | exon |
| TCONS_00037556-exon-sc0001654-1575043694:11110..12714 | TCONS_00037556-exon-sc0001654-1575043694:11110..12714 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001654 | supercontig | sc0001654:11110..12714 . |
Blast
The following BLAST results are available for this feature:
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