TCONS_00037554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037554
Unique NameTCONS_00037554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037554 ID=TCONS_00037554|Name=TCONS_00037554|organism=Clytia hemisphaerica|type=transcript|length=453bp
TCAGTGCAACCATAAAAACGGAAAATGCTAAATACTGTTTTGAGACTTGG
atttttcaattggatttgaaaattgaatttgctTCTGTTTACtaatcagC
TCGCTAAAGAAAAACGCACAGACGATATggtgaaaagaaatttaactACC
ATCACTTTCATCCATTCGTCCCCATTTGCTGAGAAGATCCTCGTCATCAA
TTCCAAGATCATACTCTGAAATAAAATATAGGGCATCCTGTTCTTCCAAC
TTCTCTGCGTCCTTGGGGACTGATTCCTCATTGTGAACCGTTTCAATTTC
ACTCCTTGATCCACCTTCGTCATTATCAGCAGATACTGGAAAGATGGAGA
AGCTTTTTGAATAATATTTTCATAAAAATATTGAAATAGGTTCTTCCAGA
AAGAAATTAAGTATATGGAGGTGGAGGATATAACATATTTTTGGAAATTT
ACC
Run BLAST on NCBI

transcript from alignment at sc0001654:6049..7570+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037554 ID=TCONS_00037554|Name=TCONS_00037554|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at sc0001654:6049..7570+ (Clytia hemisphaerica)
TCAGTGCAACCATAAAAACGGAAAATGCTAAATACTGTTTTGAGACTTGG
atttttcaattggatttgaaaattgaatttgctTCTGTTTACtaatcagg
taggtccaaagaAAGCTAAATATCACTTGCTAATTTATGCTTATGAAATA
ACTAACCCGAGGATGGTGAAACGACGAAATCAGTACTGTTACTTGCTGCT
TTCTTGTTTTTGTTCTGAATTTCATCGTGGCAGaaatctaaaataatttt
tttttttatttatgatacAGCTCGCTAAAGAAAAACGCACAGACGATATg
gtgaaaagaaatttaactACCATCACTTTCATCCATTCGTCCCCATTTGC
TGAGAAGATCCTCGTCATCAATTCCAAGATCATACTCTGAAATAAAATAT
AGGTTAGTcaacattttttataaacaaccAGGTTGCAAGTCGGTCTATAA
GAAAGCCTTCCCCTGCTAAAGATACATCGAGGCAGGCTTTACTATGTTAT
GTACTCAAAAGTGATCAAAATATCCGAGAGAGCAAATTTGTTTCGCTTAA
ATAGCAAACTGTTTTACCTTTACTCCGCTCCAAAATGTCTGCCCCCAGAA
GATTGTCGGTTGTTTTCTTTGCCTTTTGGTTTGTTTTAGGTTTTTCTGGG
GTAACAATTATGTAAAAAAgctatttatttattatttgtaCCAAAGTCAT
TTTGAAAGTCAATTAATAATCATGAATAAACTACCATATCGTTGTCCATT
AAGAAACTTatgtatacgtttttttattagaacgtatctaaaacttttga
agccccTTGGACATTCAAAATNcatacgtttttttattagaacgtatcta
aaacttttgaagccccTTGGACATTCAAAAATCACCACCATATATTTTTT
GTCGACTTTCCCTAAGAAACtggctgttttagagtccgcaaagccttaaa
atgttcttaacatttttgctgTCGAAGCCTTaagtgttcttatatagttt
gttcttataaaaaaaatttctagccAAGTTTAGTccgatatttatttttc
aagtttttggagtagaaaattgaaaaaaaaaattaatcggcAGTTTTGAA
TTTACCTTTTTTCTTTGTCTTGGCTTGTTTTGTTTTTTTCACAGGTCTCT
TTTCTAAAAAATAAATCGAAACTTAAGGCTCACATGAGAATTTGAGTGTG
AGAAGTAACGTGAAAACGCCACTTTCTTTAAAACAACATTTTCTTATGAC
ATCAAATCCTTAATGAGTTGTGTAACATAATTTTTAACTCTACCTTCTAG
GGCATCCTGTTCTTCCAACTTCTCTGCGTCCTTGGGGACTGATTCCTCAT
TGTGAACCGTTTCAATTTCACTCCTTGATCCACCTTCGTCATTATCAGCA
GATACTGGAAAGATGGAGAAGCTTTTTGAATAATATTTTCATAAAAATAT
TGAAATAGGTTCTTCCAGAAAGAAATTAAGTATATGGAGGTGGAGGATAT
AACATATTTTTGGAAATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022314XLOC_022314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037554-exon-sc0001654-1491911889:6049..6147TCONS_00037554-exon-sc0001654-1491911889:6049..6147Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1510915933:6049..6147TCONS_00037554-exon-sc0001654-1510915933:6049..6147Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1575043694:6049..6147TCONS_00037554-exon-sc0001654-1575043694:6049..6147Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1491911889:6319..6450TCONS_00037554-exon-sc0001654-1491911889:6319..6450Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1510915933:6319..6450TCONS_00037554-exon-sc0001654-1510915933:6319..6450Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1575043694:6319..6450TCONS_00037554-exon-sc0001654-1575043694:6319..6450Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1491911889:7349..7570TCONS_00037554-exon-sc0001654-1491911889:7349..7570Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1510915933:7349..7570TCONS_00037554-exon-sc0001654-1510915933:7349..7570Clytia hemisphaericaexon
TCONS_00037554-exon-sc0001654-1575043694:7349..7570TCONS_00037554-exon-sc0001654-1575043694:7349..7570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001654supercontigsc0001654:6049..7570 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581602	0.567154	0.49389	0	0	0.154946	0	0	0	0.455306	0	0	0.193403	0.200851	0	0.088603	0	0.111877	0	0.16174	0	0	1.00028	0.757834	0.15611	0.696623	0	0	0.48415	1.47982
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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