TCONS_00037503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037503
Unique NameTCONS_00037503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037503 ID=TCONS_00037503|Name=TCONS_00037503|organism=Clytia hemisphaerica|type=transcript|length=305bp
tttttttgaatGAGAGATGAGAGGAGTAGAGAAGAGAGAATCTACAACGA
TTGTGTAAATagtgtatatatatttttggtTTCAAATATCCCAAACTTGA
CTAGAAACATTAGAGAAATATGAAACGGGATGATGAAGACATGACGTGGA
AATAAGTGAAAGCGTGAGAGAGTGACGAGAGATCGCGTGAGTTTGAAGAA
CATNtgtttatctttcttctttctaatggaataggaatggttcttttaaa
atttttagattttgggaaaattagttttaaagagagaaacttttttgtgg
cgcac
Run BLAST on NCBI

transcript from alignment at sc0001644:47074..47378

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037503 ID=TCONS_00037503|Name=TCONS_00037503|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0001644:47074..47378 (Clytia hemisphaerica)
gtgcgccacaaaaaagtttctctctttaaaactaattttcccaaaatcta
aaaattttaaaagaaccattcctattccattagaaagaagaaagataaac
aNATGTTCTTCAAACTCACGCGATCTCTCGTCACTCTCTCACGCTTTCAC
TTATTTCCACGTCATGTCTTCATCATCCCGTTTCATATTTCTCTAATGTT
TCTAGTCAAGTTTGGGATATTTGAAaccaaaaatatatatacactATTTA
CACAATCGTTGTAGATTCTCTCTTCTCTACTCCTCTCATCTCTCattcaa
aaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022269XLOC_022269Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037503-exon-sc0001644-1491911889:47074..47378TCONS_00037503-exon-sc0001644-1491911889:47074..47378Clytia hemisphaericaexon
TCONS_00037503-exon-sc0001644-1510915933:47074..47378TCONS_00037503-exon-sc0001644-1510915933:47074..47378Clytia hemisphaericaexon
TCONS_00037503-exon-sc0001644-1575043694:47074..47378TCONS_00037503-exon-sc0001644-1575043694:47074..47378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001644supercontigsc0001644:47074..47378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31214	1.0058	1.30794	0.838746	0	0	0	0.529355	0.49735	0.397256	0.748239	0.873967	1.26693	0.89959	4.25218	3.24408	1.78959	3.08257	5.11035	1.23247	0	4.38908	0	0.83847	0	0	1.51831	1.21147	1.48611	2.11929
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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