TCONS_00037493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037493
Unique NameTCONS_00037493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037493 ID=TCONS_00037493|Name=TCONS_00037493|organism=Clytia hemisphaerica|type=transcript|length=489bp
NNGACATTCCCTTGAAAAGTGGCCCAATTTATGGCAATTGTAGCACTCCA
CACTTCTCCCATTCGACTCTCCTCGCCTCTCATTCATTCTCCCCCCGTTA
TTTGGACCTTGTCCATTCCACTGACGGTCATGGCCGCCTCCTCTCCCATA
ACTTCTAAACTGCCGACCACTTGGTCGAAACTTGCTATGGCCGCTATTTC
GTCGATCTTCAGCCCTGATCTGAGCCTCCGAAAGTTTTGTAACAATGTCT
TTCAGCGTGTCCATCGTTACATCCGATCTCGCAGTAGCAGCATCTGAGGG
CTTGTAAGCCGTCAGATAGCACCTTCTCGCGAGATCCTCTGCTTCCCTGG
CCGTCTTCGGCGATCCACACACAACCATGTTCCTCATCTTTTCAGTCAGT
CCTGATATGAAAAGATCCATGAGAAACGTGCCATCGTGTGAATCCCCGTT
GGAGAACTGAGTCCAAAATCTGTCGGCGTAGTCCCCTAN
Run BLAST on NCBI

protein sequence of TCONS_00037493-protein

>TCONS_00037493-protein ID=TCONS_00037493-protein|Name=TCONS_00037493-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
XGDYADRFWTQFSNGDSHDGTFLMDLFISGLTEKMRNMVVCGSPKTAREA
EDLARRCYLTAYKPSDAATARSDVTMDTLKDIVTKLSEAQIRAEDRRNSG
HSKFRPSGRQFRSYGRGGGHDRQWNGQGPNNGGRMNERRGESNGRSVECY
NCHKLGHFSRECX
Run BLAST on NCBI

transcript from alignment at sc0001644:11082..11570

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037493 ID=TCONS_00037493|Name=TCONS_00037493|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at sc0001644:11082..11570 (Clytia hemisphaerica)
NTAGGGGACTACGCCGACAGATTTTGGACTCAGTTCTCCAACGGGGATTC
ACACGATGGCACGTTTCTCATGGATCTTTTCATATCAGGACTGACTGAAA
AGATGAGGAACATGGTTGTGTGTGGATCGCCGAAGACGGCCAGGGAAGCA
GAGGATCTCGCGAGAAGGTGCTATCTGACGGCTTACAAGCCCTCAGATGC
TGCTACTGCGAGATCGGATGTAACGATGGACACGCTGAAAGACATTGTTA
CAAAACTTTCGGAGGCTCAGATCAGGGCTGAAGATCGACGAAATAGCGGC
CATAGCAAGTTTCGACCAAGTGGTCGGCAGTTTAGAAGTTATGGGAGAGG
AGGCGGCCATGACCGTCAGTGGAATGGACAAGGTCCAAATAACGGGGGGA
GAATGAATGAGAGGCGAGGAGAGTCGAATGGGAGAAGTGTGGAGTGCTAC
AATTGCCATAAATTGGGCCACTTTTCAAGGGAATGTCNN

Coding sequence (CDS) from alignment at sc0001644:11082..11570

>TCONS_00037493 ID=TCONS_00037493|Name=TCONS_00037493|organism=Clytia hemisphaerica|type=CDS|length=489bp|location=Sequence derived from alignment at sc0001644:11082..11570 (Clytia hemisphaerica)
NTAGGGGACTACGCCGACAGATTTTGGACTCAGTTCTCCAACGGGGATTC
ACACGATGGCACGTTTCTCATGGATCTTTTCATATCAGGACTGACTGAAA
AGATGAGGAACATGGTTGTGTGTGGATCGCCGAAGACGGCCAGGGAAGCA
GAGGATCTCGCGAGAAGGTGCTATCTGACGGCTTACAAGCCCTCAGATGC
TGCTACTGCGAGATCGGATGTAACGATGGACACGCTGAAAGACATTGTTA
CAAAACTTTCGGAGGCTCAGATCAGGGCTGAAGATCGACGAAATAGCGGC
CATAGCAAGTTTCGACCAAGTGGTCGGCAGTTTAGAAGTTATGGGAGAGG
AGGCGGCCATGACCGTCAGTGGAATGGACAAGGTCCAAATAACGGGGGGA
GAATGAATGAGAGGCGAGGAGAGTCGAATGGGAGAAGTGTGGAGTGCTAC
AATTGCCATAAATTGGGCCACTTTTCAAGGGAATGTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022259XLOC_022259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037493-exon-sc0001644-1491911889:11082..11570TCONS_00037493-exon-sc0001644-1491911889:11082..11570Clytia hemisphaericaexon
TCONS_00037493-exon-sc0001644-1510915933:11082..11570TCONS_00037493-exon-sc0001644-1510915933:11082..11570Clytia hemisphaericaexon
TCONS_00037493-exon-sc0001644-1575043694:11082..11570TCONS_00037493-exon-sc0001644-1575043694:11082..11570Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037493-proteinTCONS_00037493-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001644supercontigsc0001644:11082..11570 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.143463	0	0.879581	1.76471	7.00218	6.26691	0.492352	1.42697	4.27888	2.47988	6.46714	7.1957	1.09582	4.22866	2.57966	2.15106	0	0	0.402251	1.34404	0.395459	0.174735	3.04615	2.51624	0.0104943	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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