TCONS_00037490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037490
Unique NameTCONS_00037490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037490 ID=TCONS_00037490|Name=TCONS_00037490|organism=Clytia hemisphaerica|type=transcript|length=398bp
ggaaggttcttcccatttcggaagaatcttcccgatcgagttagtggcac
agactgttaAATACTTAGGAACTTCATCTTGTGCAATAATCAAATGATTT
TCAGTTGGTAATTCATTGAGTTTTTCTATGTTATATGCATCAACTGGTTT
ATTTCAGCAATAGGTTTATTAGGTCCAGTTCTTTCTCTTGGTCTATCACA
ATACCGGTCAAGCATattacttttgaaaattgaagtaCTATCTTCAGGCA
ACTCATTAATTTCATCTTCTCTAAGGCAAATTCTAAATCTCTTTTCTGGG
GCATTAGTATTTGCAAAAGTTACACCTGGATAGAGCTTACGAAGCCATAG
CTGTGGCATACTGAGATAAACTACTTCTTGCACTGACACTTCTCGCTT
Run BLAST on NCBI

transcript from alignment at sc0001642:28442..29297-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037490 ID=TCONS_00037490|Name=TCONS_00037490|organism=Clytia hemisphaerica|type=transcript|length=856bp|location=Sequence derived from alignment at sc0001642:28442..29297- (Clytia hemisphaerica)
GGAAGGTTCTTCCCATTTCGGAAGAATCTTCCCGATCGAGTTAGTGGCAC
AGACTGTTAAATACTTAGGAACTTCATCTTGTGCAATAATCAAATGATTT
TCAGTTGGTAATTCATTGAGTTTTTCTATGTTATATGCATCAACTGGTTT
ATTTTCTGCAAAAATATGAGTCACATCAGAGGGATAATCTGGACTGTCTT
TTGCAATAAATCTAGATTTTAAAAGTTCTTCTTTTTCTTTGTCTAGCTCG
CCTAAACGAATTTGATTCAAGAGGTCAATAAAATCAATATCATCTCTCTG
TCTCCACCTTTTTATGCAATGAGTATTTGATAGATATCGTAACACCGCAT
CAAAAGGTATGTGATACATATCCATACACCTTCAGTATCTGAATTTCTGG
GGTAATGCGCACAACGCACTTGTTTCTGTTAGGCTGATGAAGTCGAAGTA
CAAGTGGAACTTTGCGGCATTTTAGTTTACCTTTCATTGAACAAAGTGAG
AGATGGTTTGATTCTATCAAATTATCATCCAATTCATTAGGCTGGCAATC
ATTTTCACTACATTCTTTATAGACAACACTGTAGAATCTCAAGAATTCCG
CATAACACATTTCAGCAATAGGTTTATTAGGTCCAGTTCTTTCTCTTGGT
CTATCACAATACCGGTCAAGCATATTACTTTTGAAAATTGAAGTACTATC
TTCAGGCAACTCATTAATTTCATCTTCTCTAAGGCAAATTCTAAATCTCT
TTTCTGGGGCATTAGTATTTGCAAAAGTTACACCTGGATAGAGCTTACGA
AGCCATAGCTGTGGCATACTGAGATAAACTACTTCTTGCACTGACACTTC
TCGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022256XLOC_022256Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037490-exon-sc0001642-1575043694:29148..29297TCONS_00037490-exon-sc0001642-1575043694:29148..29297Clytia hemisphaericaexon
TCONS_00037490-exon-sc0001642-1575043694:28442..28689TCONS_00037490-exon-sc0001642-1575043694:28442..28689Clytia hemisphaericaexon
TCONS_00037490-exon-sc0001642-1510915933:29148..29297TCONS_00037490-exon-sc0001642-1510915933:29148..29297Clytia hemisphaericaexon
TCONS_00037490-exon-sc0001642-1510915933:28442..28689TCONS_00037490-exon-sc0001642-1510915933:28442..28689Clytia hemisphaericaexon
TCONS_00037490-exon-sc0001642-1491911889:29148..29297TCONS_00037490-exon-sc0001642-1491911889:29148..29297Clytia hemisphaericaexon
TCONS_00037490-exon-sc0001642-1491911889:28442..28689TCONS_00037490-exon-sc0001642-1491911889:28442..28689Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001642supercontigsc0001642:28442..29297 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05831	0.617048	1.48813	1.58829	3.19918	1.14346	1.16461	1.94973	0.839712	0.600904	2.74908	1.26743	0.930954	1.418	0.545292	1.13294	0.521781	0.550927	0	0.971994	1.17953	0.683839	0.645684	0.62626	0.979182	3.69393	1.03439	0.493631	0	1.23592
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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