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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037474 ID=TCONS_00037474|Name=TCONS_00037474|organism=Clytia hemisphaerica|type=transcript|length=1830bp
ATGAAAAACCGATATACTACTCATTTTATGAGTAGGATTGGAGGCTACAA
CATCATGAATTTCAGCTTTCTGTGCGGTATCTGTCTGTCTTTTCAATTCC
GTATATTTCTGACCATATGTTATGGTTTGATGACAATATTTGGTGGCATT
GGGAATATAGTCTCCATCATCAGTAtttataaaaagaatcaaaactcGAA
CGATCGAGTGTTTACCCTGTTTATCCGTGGCTAAACTTTTGGACATTTAA
TTTTGGATCATTCCCAATCACCATGAGGATTTTTGCCTTGGTCCTGTTAA
GCATGACCTCAACTTCATCTTTGACAATCATCATGTTAGCCGCTATCAAA
TATCTCAAGATTTCAAGAACAAGTACTTTTGATGATCTCATTACAGAGAA
GCGGTTATGGATCTTAATAGTGTTATGTTGGTTTGTACCAGCCTTNTGAT
CTCATTACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGTTGGTTTGT
ACCAGCCTTCCCGATGCTTATCAATGTGATTCTAGGAAATGTATTCAACA
ATTATATTTCTTTTGCCATTACCATCACCACGATCATATCTTTACCAGTG
TTATATCTCATGATCTTAATTGTCttcaagaaatcaagaaaacagGTCGC
CATAACAGCAAACTCGACAATCCAACAAGAATTGAATGCCCAAATAACAG
AACGCATCTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGATTGGCGTC
TATTTCGCATGTACAGGTTTAACCGTTCTCTCTTACACTCTATATGCTTA
TAGTGTGATTGAAAGCGGTTACTTATATCAAATAACCAATATTATTTNTC
TTACACTCTATATGCTTATGGTGTGATTGAAAGCGGTTACTTATATCAAA
TAACCAATATTATTTTTCTTGGGAATAGTTGTGCTAATCCCTGCATTTAC
ATGTTCAAAGACAAAAAACTCCGTAAAATCGCAAAAGCCACTTTCAGAAA
ATCGCAAGAAGTTTCACTTTAGACGAAGATGTTTTAAAAGATAAATGTAA
ACCTTTATGACTTATGGAcatcaaatggacgttgtttggATGTTGTACGA
ACCTTCATATTCTGTTGTTCCGTAGCCTGATGATCCTGAAGGTGAATGAA
CTTCCCCTGtaatcaaaagaaattgaaatcgCGAACTAGTGCCCTTCATA
AAGTCCTATTTCAAATTTGCTGGCAGCGTTTTTTCGAacctcaatagatt
ttgatagaatttgaattaacccagctggcacacaacgttctttcaacgtt
tatttaacgttcacaacgtcaatataacgttagatgaacgttgaaacaac
gttgtgtgctagcttggaagtagcggttttgtgctcgttaaaaagataat
tggtggtggaatattatcaacaaagaaaacaatttgaataatggaaaaac
gaagatgaaaaatgaggaagaagaaaatcaaccttttgtagaataatgct
atgtacgatctttatttttgtatcagaaactcttcaatctttGAACGTCT
TGAAACTTTCACCGGTGATAGATATTGAGTTTACGAAATTTAAGTTTGGT
CACATGCGCAGTTGgaatttacagaccggtctgtattTTACCgaaaatgc
tcactttcagtATTACCtcatatttttcttaaattattGCTGTAAGTTTT
TataagtttaggcaaaaagggtAATTTGGAGTAATGCTCGTGGGGTTAAA
TTATTTTGTATATAATGTACACACAGACTAAAGAATTGTGTAAATATGAT
AATAAgagtgaaaataaaatttaatttaac Run BLAST on NCBI protein sequence of TCONS_00037474-protein >TCONS_00037474-protein ID=TCONS_00037474-protein|Name=TCONS_00037474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MLINVILGNVFNNYISFAITITTIISLPVLYLMILIVFKKSRKQVAITAN
STIQQELNAQITERISKKLVRRSLWLIGVYFACTGLTVLSYTLYAYSVIE
SGYLYQITNIIXLTLYMLMV Run BLAST on NCBI transcript from alignment at sc0001640:44667..46554- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037474 ID=TCONS_00037474|Name=TCONS_00037474|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at sc0001640:44667..46554- (Clytia hemisphaerica)
ATGAAAAACCGATATACTACTCATTTTATGAGTAGGATTGGAGGCTACAA
CATCATGAATTTCAGCTTTCTGTGCGGTATCTGTCTGTCTTTTCAATTCC
GTATATTTCTGACCATATGTTATGGTTTGATGACAATATTTGGTGGCATT
GGGAATATAGTCTCCATCATCAGTATTTATAAAAAGAATCAAAACTCGAA
CGATCGAGATAACATTGATCTGATTTTATTATCACTTGCTGTTTGCGATG
CTTTGGTTTCAATCACTGTTTACCCTGTTTATCCGTGGCTAAACTTTTGG
ACATTTAATTTTGGATCATTCCCAATCACCATGAGGATTTTTGCCTTGGT
CCTGTTAAGCATGACCTCAACTTCATCTTTGACAATCATCATGTTAGCCG
CTATCAAATATCTCAAGATTTCAAGAACAAGTACTTTTGATGATCTCATT
ACAGAGAAGCGGTTATGGATCTTAATAGTGTTATGTTGGTTTGTACCAGC
CTTNTGATCTCATTACAGAGAAGCGGTTATGGATCTTAATAGTGTTGTGT
TGGTTTGTACCAGCCTTCCCGATGCTTATCAATGTGATTCTAGGAAATGT
ATTCAACAATTATATTTCTTTTGCCATTACCATCACCACGATCATATCTT
TACCAGTGTTATATCTCATGATCTTAATTGTCTTCAAGAAATCAAGAAAA
CAGGTCGCCATAACAGCAAACTCGACAATCCAACAAGAATTGAATGCCCA
AATAACAGAACGCATCTCTAAGAAGCTTGTGCGGCGCTCACTTTGGCTGA
TTGGCGTCTATTTCGCATGTACAGGTTTAACCGTTCTCTCTTACACTCTA
TATGCTTATAGTGTGATTGAAAGCGGTTACTTATATCAAATAACCAATAT
TATTTNTCTTACACTCTATATGCTTATGGTGTGATTGAAAGCGGTTACTT
ATATCAAATAACCAATATTATTTTTCTTGGGAATAGTTGTGCTAATCCCT
GCATTTACATGTTCAAAGACAAAAAACTCCGTAAAATCGCAAAAGCCACT
TTCAGAAAATCGCAAGAAGTTTCACTTTAGACGAAGATGTTTTAAAAGAT
AAATGTAAACCTTTATGACTTATGGACATCAAATGGACGTTGTTTGGATG
TTGTACGAACCTTCATATTCTGTTGTTCCGTAGCCTGATGATCCTGAAGG
TGAATGAACTTCCCCTGTAATCAAAAGAAATTGAAATCGCGAACTAGTGC
CCTTCATAAAGTCCTATTTCAAATTTGCTGGCAGCGTTTTTTCGAACCTC
AATAGATTTTGATAGAATTTGAATTAACCCAGCTGGCACACAACGTTCTT
TCAACGTTTATTTAACGTTCACAACGTCAATATAACGTTAGATGAACGTT
GAAACAACGTTGTGTGCTAGCTTGGAAGTAGCGGTTTTGTGCTCGTTAAA
AAGATAATTGGTGGTGGAATATTATCAACAAAGAAAACAATTTGAATAAT
GGAAAAACGAAGATGAAAAATGAGGAAGAAGAAAATCAACCTTTTGTAGA
ATAATGCTATGTACGATCTTTATTTTTGTATCAGAAACTCTTCAATCTTT
GAACGTCTTGAAACTTTCACCGGTGATAGATATTGAGTTTACGAAATTTA
AGTTTGGTCACATGCGCAGTTGGAATTTACAGACCGGTCTGTATTTTACC
GAAAATGCTCACTTTCAGTATTACCTCATATTTTTCTTAAATTATTGCTG
TAAGTTTTTATAAGTTTAGGCAAAAAGGGTAATTTGGAGTAATGCTCGTG
GGGTTAAATTATTTTGTATATAATGTACACACAGACTAAAGAATTGTGTA
AATATGATAATAAGAGTGAAAATAAAATTTAATTTAAC Coding sequence (CDS) from alignment at sc0001640:44667..46554- >TCONS_00037474 ID=TCONS_00037474|Name=TCONS_00037474|organism=Clytia hemisphaerica|type=CDS|length=363bp|location=Sequence derived from alignment at sc0001640:44667..46554- (Clytia hemisphaerica)
ATGCTTATCAATGTGATTCTAGGAAATGTATTCAACAATTATATTTCTTT
TGCCATTACCATCACCACGATCATATCTTTACCAGTGTTATATCTCATGA
TCTTAATTGTCTTCAAGAAATCAAGAAAACAGGTCGCCATAACAGCAAAC
TCGACAATCCAACAAGAATTGAATGCCCAAATAACAGAACGCATCTCTAA
GAAGCTTGTGCGGCGCTCACTTTGGCTGATTGGCGTCTATTTCGCATGTA
CAGGTTTAACCGTTCTCTCTTACACTCTATATGCTTATAGTGTGATTGAA
AGCGGTTACTTATATCAAATAACCAATATTATTTNTCTTACACTCTATAT
GCTTATGGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037474-exon-sc0001640-1575043694:46347..46554 | TCONS_00037474-exon-sc0001640-1575043694:46347..46554 | Clytia hemisphaerica | exon |
| TCONS_00037474-exon-sc0001640-1575043694:44667..46288 | TCONS_00037474-exon-sc0001640-1575043694:44667..46288 | Clytia hemisphaerica | exon |
| TCONS_00037474-exon-sc0001640-1510915933:46347..46554 | TCONS_00037474-exon-sc0001640-1510915933:46347..46554 | Clytia hemisphaerica | exon |
| TCONS_00037474-exon-sc0001640-1510915933:44667..46288 | TCONS_00037474-exon-sc0001640-1510915933:44667..46288 | Clytia hemisphaerica | exon |
| TCONS_00037474-exon-sc0001640-1491911889:46347..46554 | TCONS_00037474-exon-sc0001640-1491911889:46347..46554 | Clytia hemisphaerica | exon |
| TCONS_00037474-exon-sc0001640-1491911889:44667..46288 | TCONS_00037474-exon-sc0001640-1491911889:44667..46288 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001640 | supercontig | sc0001640:44667..46554 - |
Blast
The following BLAST results are available for this feature:
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