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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037473 ID=TCONS_00037473|Name=TCONS_00037473|organism=Clytia hemisphaerica|type=transcript|length=378bp
attaaacaaaaataatgcGGCGGCAAGTGTTGTCAACCTTTCCAGTGCTG
TCAATGCCAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCA
TTGACCAATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAA
CACGGAAActgaaGCAATATCGGTATCATTGGCTCAGCCTAATTTCAAAC
CAAATATCAAAGGTGCACTTCTAGCTATGCTAGTGTGTCTGGTTACTTTC
GTGGTAGTGTACCTAATGGAGTATGACTCTATTAACAAAATTATGCGttt
ttatAGACGTATTGACCCTGACATTAATAGCTCTACTCAAGAGCCAGAAG
CTTGGCAAACGTGGATGCAGCAGGTTTA Run BLAST on NCBI protein sequence of TCONS_00037473-protein >TCONS_00037473-protein ID=TCONS_00037473-protein|Name=TCONS_00037473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
LNKNNAAASVVNLSSAVNASMLNLNAGEVSSHSLTNTTNVTDRENINPVN
TETEAISVSLAQPNFKPNIKGALLAMLVCLVTFVVVYLMEYDSINKIMRF
YRRIDPDINSSTQEPEAWQTWMQQV Run BLAST on NCBI transcript from alignment at sc0001640:13076..14742+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037473 ID=TCONS_00037473|Name=TCONS_00037473|organism=Clytia hemisphaerica|type=transcript|length=1667bp|location=Sequence derived from alignment at sc0001640:13076..14742+ (Clytia hemisphaerica)
attaaacaaaaataatgcGGCGGCAAGTGTTGTCAACCTTTCCAGTGCTG
TCAATGCCAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCA
TTGACCAATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAA
CACGGAAAcgtaaaaaattttatataagtTCTGTAGTGTGGTAATTTTCC
ATACTGCTTGCTTAGTGAAGACTGAAGCTTAGCACTTCCTTGCAAGGAGG
ATGGTCattcaatgaaatcattgaGAAATTCAGCTTTCCATGTAACTTGG
AAAAATCGCAAAAAGCGCTTgattattaaaggttttatttttacataagt
gttcccctttcatatcagacacatatttcatataagGATAGTGACTGCCT
ATTGCtgtatattatgctgatataagcaaaaaaatgttttgctttTCCTC
ttcctgaccaatcttgctctacatccgtgtcaatccaatgtgtaaaagct
tgtgaatcaaaattgatgagtaagcaaacgatatcactcttatttaaaat
taaaacctttaaaCATTCAGACGCTATAAATTAATTTCTAAGAATAGATA
TTGCCTAGagtttaaatttgttttttatcttttctttttcagtgaaGCAA
TATCGGTATCATTGGCTCAGCCTAATTTCAAACCAAATATCAAAGGTGCA
CTTCTAGCTATGCTAGTGTGTCTGGTTACTTTCGTGGTAGTGTACCTAAT
GGAGTATGACTCTATTAACAAAATTATGCGGTAAGAGATAGTTTTAATAG
CTTCCAAGCTGacacgcaacgttgtttcaacgttcatctaacgttatatg
gacgttatgaacattagataaacgttgaaacaacattatgtgtcagctgg
gttactctaaggtcccgaataaacgTCCCGACCGGTTTTTATCCGTTATT
ATTGTTCTTATCGTGTACCTCCTGTTTAATAAAGTtgtacagtaaaacct
ctaattaacGGacactctaaaaggcggacacttctaattagcggacacta
acccacATTCCACTGTATTCCAAAAATCACCATGTTACATTTTTGGAATA
CAACTTTATTGAATTCGCTCTACGAATAGTATTGAGCACTCTTTAAATGG
TTGTTCAACAAACACATTAGTACCCCCTGTTTATTTAcattgtaaaatat
tttcagctcgCAAGCTGAATTTGCTCTAAATAACCTGCTTTTTAAGCtta
taattaccttattttggggtttttttCGGACCCCCGCCCCCCTTTTATTC
ACCCAAACATTAATgagattttgaaaacatttcagaCCTCGCCCCTACTA
TTCTGGACCTTAGAAGTACTCATAAAGATAAATAAATTATCTATAGTTGC
ATTCCACTAAAGAGGgtgatgaaattttctttgGGCTACCGGTAATTCTG
ATTGATAAAAAGTGGCATACTTAAAAGATAGATCTTGGAAAGAGCTTTTC
AACGAACCCAAACATGACCCATTTTGCTTTAGCTCCAGCCCACAGCACTG
ATGGAGTTAAGTttcacattttctttttttttacagtttttatAGACGTA
TTGACCCTGACATTAATAGCTCTACTCAAGAGCCAGAAGCTTGGCAAACG
TGGATGCAGCAGGTTTA Coding sequence (CDS) from alignment at sc0001640:13076..14742+ >TCONS_00037473 ID=TCONS_00037473|Name=TCONS_00037473|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0001640:13076..14742+ (Clytia hemisphaerica)
ttaaacaaaaataatgcGGCGGCAAGTGTTGTCAACCTTTCCAGTGCTGT
CAATGCCAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCAT
TGACCAATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAAC
ACGGAAActgaaGCAATATCGGTATCATTGGCTCAGCCTAATTTCAAACC
AAATATCAAAGGTGCACTTCTAGCTATGCTAGTGTGTCTGGTTACTTTCG
TGGTAGTGTACCTAATGGAGTATGACTCTATTAACAAAATTATGCGtttt
tatAGACGTATTGACCCTGACATTAATAGCTCTACTCAAGAGCCAGAAGC
TTGGCAAACGTGGATGCAGCAGGTTttaaacaaaaataatgcGGCGGCAA
GTGTTGTCAACCTTTCCAGTGCTGTCAATGCCAGCATGCTAAACTTAAAT
GCTGGTGAAGTTTCTTCCCATTCATTGACCAATACCACAAACGTCACAGA
TAGAGAAAATATCAACCCAGTGAACACGGAAActgaaGCAATATCGGTAT
CATTGGCTCAGCCTAATTTCAAACCAAATATCAAAGGTGCACTTCTAGCT
ATGCTAGTGTGTCTGGTTACTTTCGTGGTAGTGTACCTAATGGAGTATGA
CTCTATTAACAAAATTATGCGtttttatAGACGTATTGACCCTGACATTA
ATAGCTCTACTCAAGAGCCAGAAGCTTGGCAAACGTGGATGCAGCAGGTT
ttaaacaaaaataatgcGGCGGCAAGTGTTGTCAACCTTTCCAGTGCTGT
CAATGCCAGCATGCTAAACTTAAATGCTGGTGAAGTTTCTTCCCATTCAT
TGACCAATACCACAAACGTCACAGATAGAGAAAATATCAACCCAGTGAAC
ACGGAAActgaaGCAATATCGGTATCATTGGCTCAGCCTAATTTCAAACC
AAATATCAAAGGTGCACTTCTAGCTATGCTAGTGTGTCTGGTTACTTTCG
TGGTAGTGTACCTAATGGAGTATGACTCTATTAACAAAATTATGCGtttt
tatAGACGTATTGACCCTGACATTAATAGCTCTACTCAAGAGCCAGAAGC
TTGGCAAACGTGGATGCAGCAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037473-exon-sc0001640-1491911889:13076..13234 | TCONS_00037473-exon-sc0001640-1491911889:13076..13234 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1510915933:13076..13234 | TCONS_00037473-exon-sc0001640-1510915933:13076..13234 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1575043694:13076..13234 | TCONS_00037473-exon-sc0001640-1575043694:13076..13234 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1491911889:13718..13855 | TCONS_00037473-exon-sc0001640-1491911889:13718..13855 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1510915933:13718..13855 | TCONS_00037473-exon-sc0001640-1510915933:13718..13855 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1575043694:13718..13855 | TCONS_00037473-exon-sc0001640-1575043694:13718..13855 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1491911889:14662..14742 | TCONS_00037473-exon-sc0001640-1491911889:14662..14742 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1510915933:14662..14742 | TCONS_00037473-exon-sc0001640-1510915933:14662..14742 | Clytia hemisphaerica | exon |
| TCONS_00037473-exon-sc0001640-1575043694:14662..14742 | TCONS_00037473-exon-sc0001640-1575043694:14662..14742 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001640 | supercontig | sc0001640:13076..14742 + |
Blast
The following BLAST results are available for this feature:
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