TCONS_00037467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037467
Unique NameTCONS_00037467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length517

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037467 ID=TCONS_00037467|Name=TCONS_00037467|organism=Clytia hemisphaerica|type=transcript|length=517bp
GAGACTTCATGGAAGGATTTCCATATCCCTTTTAAGGTTAAATTTGAAGA
CAGGAGACAAATAACTTTTCCTGTTTGTTTCCTATCTGCAATACTGAGGA
CTTGTTTTGCATGTGGTTATGGGTATAAATTGAAGTCCTTGAACACGGTT
TGAGTACACAACAAAATCAAGAAGCAGCCAAgaagcaaaaatgaagtcaa
tGTTGGTTATAACTCTCCTTCTCATTGGGGcATCTTTAAGTTCAGTAATT
GGTCTAGTAATTAAATTTACACCAGGACTAGTGACCGTGATTGATCCAGC
ATTATGTCAGGATAACCTTTGTGCGGGCAGAGAAGAAGGTGAACATCAAA
TAACCTCGGAGCTTGTTGTTGAATGTGGTCAAAATTGTAATGTATTGAAA
TGTTACCAATGTAAACTTTTCGGAAAAATATTTGGTATAACGGCTGATCC
TGCCACCTGCGTGTAAAGTAAGAGACTAAAGATGCGTCTTAAATATCTTA
CTTCTTAACCTCACCNN
Run BLAST on NCBI

transcript from alignment at sc0001639:23566..27322+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037467 ID=TCONS_00037467|Name=TCONS_00037467|organism=Clytia hemisphaerica|type=transcript|length=3757bp|location=Sequence derived from alignment at sc0001639:23566..27322+ (Clytia hemisphaerica)
GAGACTTCATGGAAGGATTTCCATATCCCTTTTAAGGTTAAATTTGAAGA
CAGGAGACAAATAACTTTTCCTGTTTGTTTCCTATCTGCAATACTGAGGA
CTTGTTTTGCATGTGGTTATGGGTATAAATTGAAGTCCTTGAACACGGTT
TGAGTACACAACAAAATCAAGAAGCAGCCAAgaagcaaaaatgaagtcaa
tGTTGGTTATAACTCTCCTTCTCATTGGGGGTAAGTTTGTATCTTGTATT
TATTTATGCTTTTTTGAATGGTATACTTGGTCCAGATCATAGATTTCTGC
AAAGACCGAAGGGATAGATCTAGATAgagttttttggctgaaaagtgtgc
cgtggttatgTTGGAAATCCtatctaggtcacgtgacattacaatatgaT
TTTTTAGTTCTTGAACAGGCAGAAGCTTtgcggattttcgaaaacaatag
cattaatatttttttctatattcacttttgttttgcttcaaaatgcctaa
agcactccatctaggCTTTCCGGCTTTTCAGAAATTTATGGTCCAGATAC
TTAAACTAAATATTTGGAATATGATCAACGATTTAACTAAGATTCCACCG
AGAAAGAAATGTATAGCCTATTAAAGGTGTGAGCATTTCAAGACTTTTTC
AGATTGCCTTCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNcatcttgccctagtaccccccgg
gtcTTATGCTTGGTAGccattgttcttaaacaatagagccattgtttagg
tacgaAAGACTGAGCCaacatattcttataaaagttaTAACATATAAAGA
AAACACATGTATGTTgccttttattttcaaatcgttTAATTAAAAACCCG
TATCACTTTTCCAACAATATACAACTTCTAAAAATTATAGCACGACTGGG
TCGGTGCCgatggggggggggcacttgaaaatgaaaaatggagaaACATC
TGggtgaaaaatcgacccttacggtgcattttcttgaaaacatttGTTCA
TTTTAAAGACCAAATTTAGCTGAAACAAACCTGTAGGCTGTGGTTCTCGT
TGACTTTTTCATGGCTGTATGGCATTGACAGTatggctgaaaaacacaca
cTATTATAACCTAAGATTGTAGAAGAACCTTCAATTAATAAAGGACTTTT
TTAGAGAAAGTAATATATCAAACAATTCCTGCCCTTCCTGTTATTGTATT
TCTAAAAGAATATTGAGAGACTTCATGGAAGGATTTCCATATCCCTTTTA
AGGTTAAATTTGAAGACAGGAGACAAATAACTTTTCCTGTTTGTTTCCTA
TCTGCAATACTGAGGACTTGTTTTGCATGTGGTTATGGGTATAAATTGAA
GTCCTTGAACACGGTTTGAGTACACAACAAAATCAAGAAGCAGCCACgaa
gcaaaaatgaagtcaatGTTGGTTATAACTCTCCTTCTCATTGGGGGTAA
GTTTGTATCTTGTACTTATTTATGCTTTTTTGACTGGTATACTTGGTCCA
GATCATAGATTTCTGCAAAGACCGAAGGGATAGATCTAGATAgagttttt
tggctgaaaagtgtgccgtggttatgTTGGAAATCCtatctaggtcacgt
gacattacaatatgaTTTTTTAGTTCTTGAACAGGCAGAAGCTTtgcgga
ttttcgaaaacaatagcattaatatttttttctatattcacttttgtttt
gcttcaaaatgcctaaagcactccatctaggCTTTCCGGCTTTTCAGAAA
TTTATGGTCCAGATACTTAAACTAAATATTTGGAATATGATCAACGATTT
AACTAAGATTCCACCGAGAAAGAAATGNTCGGGataccaaaatatttgga
atATGATCAACGATTTAACTAAGATTCCACGGAGAAAGAAATGTATAACC
TATTAAAGGTGTGAGCATTTCAAGACTTTTTCAGATTGCcttctttttag
ttttttggcctCAGTTATACACGATGAAAgataatttcattgttttatta
atcaattattttcatttcagcATCTTTAAGTTCAGTAATTGGTCTAGTAA
TTAAATTTACACCAGGACTAGTGACCGTGATTGATCCAGCATTATGTCAG
GATAACCTTTGTGCGGGCAGAGAAGAAGGTGAACATCAAATAACCTCGGA
GCTTGTTGTTGAATGTGGTCAAAATTGTAATGTATTGAAATGTTACCAAT
GTAAACTTTTCGGAAAAATATTTGGTATAACGGCTGATCCTGCCACCTGC
GTGTAAAGTAAGAGACTAAAGATGCGTCTTAAATATCTTACTTCTTAACC
TCACCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022234XLOC_022234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037467-exon-sc0001639-1491911889:23566..23766TCONS_00037467-exon-sc0001639-1491911889:23566..23766Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1510915933:23566..23766TCONS_00037467-exon-sc0001639-1510915933:23566..23766Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1575043694:23566..23766TCONS_00037467-exon-sc0001639-1575043694:23566..23766Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1491911889:26433..26461TCONS_00037467-exon-sc0001639-1491911889:26433..26461Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1510915933:26433..26461TCONS_00037467-exon-sc0001639-1510915933:26433..26461Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1575043694:26433..26461TCONS_00037467-exon-sc0001639-1575043694:26433..26461Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1491911889:27036..27322TCONS_00037467-exon-sc0001639-1491911889:27036..27322Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1510915933:27036..27322TCONS_00037467-exon-sc0001639-1510915933:27036..27322Clytia hemisphaericaexon
TCONS_00037467-exon-sc0001639-1575043694:27036..27322TCONS_00037467-exon-sc0001639-1575043694:27036..27322Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001639supercontigsc0001639:23566..27322 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.554567	0	0	0	0	0.548724	0	17.1936	1.46095	0	0.317418	0	0	0	0	0	0.120072	0	0	0.565663	0.603691	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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