TCONS_00037466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037466
Unique NameTCONS_00037466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length426

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037466 ID=TCONS_00037466|Name=TCONS_00037466|organism=Clytia hemisphaerica|type=transcript|length=426bp
AATAACAAACAAGGTAGGCCCAAGAATGTCGCCTTGCTTTACACCAATGG
TACACGGCATAGTGTTATCAACAGTTTCAACGACAAAGTTTACTACAAAG
TTTTTGTGTAAGAGTTTCAAGATTGAGATCATTTTCTCTGGTAGTCCAAA
TTTTGACAATACTTCCCATAATAACGACCTTGGTACTCTGTCGAACGCTT
TAACGAGGTCGAGAAAAAGTACCCAAGTTTCAAGGTTNAGATCAATTTCT
CTGGTAGTCCAAATTTTGACAATACTTCCCATAATAACGACCTTGGTACT
CTGTCGAACGCTTTAACGAGGTCGAGAAAAAGTACCCAAGTTTCAAGGTT
ATGTTCTCTACGTTTTTTAAGCGCAAGTTTGACAGAGAAAGCGGCATCCA
TGCATCCTCTACCTTGTCAAAAACCA
Run BLAST on NCBI

transcript from alignment at sc0001638:32928..33353

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037466 ID=TCONS_00037466|Name=TCONS_00037466|organism=Clytia hemisphaerica|type=transcript|length=426bp|location=Sequence derived from alignment at sc0001638:32928..33353 (Clytia hemisphaerica)
TGGTTTTTGACAAGGTAGAGGATGCATGGATGCCGCTTTCTCTGTCAAAC
TTGCGCTTAAAAAACGTAGAGAACATAACCTTGAAACTTGGGTACTTTTT
CTCGACCTCGTTAAAGCGTTCGACAGAGTACCAAGGTCGTTATTATGGGA
AGTATTGTCAAAATTTGGACTACCAGAGAAATTGATCTNAACCTTGAAAC
TTGGGTACTTTTTCTCGACCTCGTTAAAGCGTTCGACAGAGTACCAAGGT
CGTTATTATGGGAAGTATTGTCAAAATTTGGACTACCAGAGAAAATGATC
TCAATCTTGAAACTCTTACACAAAAACTTTGTAGTAAACTTTGTCGTTGA
AACTGTTGATAACACTATGCCGTGTACCATTGGTGTAAAGCAAGGCGACA
TTCTTGGGCCTACCTTGTTTGTTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022233XLOC_022233Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037466-exon-sc0001638-1491911889:32928..33353TCONS_00037466-exon-sc0001638-1491911889:32928..33353Clytia hemisphaericaexon
TCONS_00037466-exon-sc0001638-1510915933:32928..33353TCONS_00037466-exon-sc0001638-1510915933:32928..33353Clytia hemisphaericaexon
TCONS_00037466-exon-sc0001638-1575043694:32928..33353TCONS_00037466-exon-sc0001638-1575043694:32928..33353Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001638supercontigsc0001638:32928..33353 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.318861	0.373346	0.21156	0.707864	0.387474	0	0.225168	0.180635	0.996574	0.496918	0.730679	0.844381	0.979271	0.754167	0.494269	0.289978	0.697584	1.79625	0.633956	1.50602	2.56186	2.02691	0.730537	0.254553	0.956334	0.299517	0	0.922286	0.282594
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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