TCONS_00037465 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037465
Unique NameTCONS_00037465
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037465 ID=TCONS_00037465|Name=TCONS_00037465|organism=Clytia hemisphaerica|type=transcript|length=818bp
TTTGGGACGTTTTGCATTTATACAGCTAACAAGATTCTGAAGAAAAGAAT
CCCAAATAGCGACATCTGCAGCTCTAACAGGGGCGTATGCGGAGAcgaga
aaaatatcaatatttttgtttcgattGTCTTTCAATGAGAGCCTAGTTGC
AATTATACGCTTACCGAAATCGGTGTAGACAGATGAGCCTGCTTCTTTCC
AGGCTTGGGTTGCGGTTTTACTGAGGACAATACCGACACCGCCTTGACCA
CGCTTACTTTTGTTATCTGATTCGTTTAAACCGTGCAAAAGAAAGGTACA
GTCATTCACAAGTTCTATTGATTTACCACTTCTCCATGATTCTTGGACAC
AAAGAGCAAATGTATTCTGGCGTTTAATCTGGGTCGAGAGTTCATAGATT
CTTTCAGCAGATTTTAATCCTCTTACGTTTTGAGTAATAATGTTCAAATG
TTTGAATTTCTTCGCTTTTGGCATGACAAACTGGAGCTCGCGACACCACC
AGTGTTGGTACTTAGATGATCAACTCCGGAATCTGTGGTAGAAGAGTTCC
TCTGGCTAACAGCAACCGTTGTAGTGAGATGACCATCATATCAGCACAGC
CAAGTACATCTACATGAACATCGTTATTGTTGGTTGTCGATGTTTAGGTG
TGGTGGATCACCCCACTTTAATGTGGCGGATTTTCTTTCACCACCAcacc
cttttttcttttttagtgatctataagaacaacttattcactaattctta
atggagtgaatttttttatctgtgaCTCATATAAAGTATGACGAAAAAAT
CCCCAATTTGACCTGGAA
Run BLAST on NCBI

protein sequence of TCONS_00037465-protein

>TCONS_00037465-protein ID=TCONS_00037465-protein|Name=TCONS_00037465-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
MPKAKKFKHLNIITQNVRGLKSAERIYELSTQIKRQNTFALCVQESWRSG
KSIELVNDCTFLLHGLNESDNKSKRGQGGVGIVLSKTATQAWKEAGSSVY
TDFGKRIIATRLSLKDNRNKNIDIFLVSAYAPVRAADVAIWDSFLQNLVS
CINAKRPK
Run BLAST on NCBI

transcript from alignment at sc0001638:30542..31359

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037465 ID=TCONS_00037465|Name=TCONS_00037465|organism=Clytia hemisphaerica|type=transcript|length=818bp|location=Sequence derived from alignment at sc0001638:30542..31359 (Clytia hemisphaerica)
TTCCAGGTCAAATTGGGGATTTTTTCGTCATACTTTATATGAGtcacaga
taaaaaaattcactccattaagaattagtgaataagttgttcttatagat
cactaaaaaagaaaaaagggtgTGGTGGTGAAAGAAAATCCGCCACATTA
AAGTGGGGTGATCCACCACACCTAAACATCGACAACCAACAATAACGATG
TTCATGTAGATGTACTTGGCTGTGCTGATATGATGGTCATCTCACTACAA
CGGTTGCTGTTAGCCAGAGGAACTCTTCTACCACAGATTCCGGAGTTGAT
CATCTAAGTACCAACACTGGTGGTGTCGCGAGCTCCAGTTTGTCATGCCA
AAAGCGAAGAAATTCAAACATTTGAACATTATTACTCAAAACGTAAGAGG
ATTAAAATCTGCTGAAAGAATCTATGAACTCTCGACCCAGATTAAACGCC
AGAATACATTTGCTCTTTGTGTCCAAGAATCATGGAGAAGTGGTAAATCA
ATAGAACTTGTGAATGACTGTACCTTTCTTTTGCACGGTTTAAACGAATC
AGATAACAAAAGTAAGCGTGGTCAAGGCGGTGTCGGTATTGTCCTCAGTA
AAACCGCAACCCAAGCCTGGAAAGAAGCAGGCTCATCTGTCTACACCGAT
TTCGGTAAGCGTATAATTGCAACTAGGCTCTCATTGAAAGACaatcgaaa
caaaaatattgatatttttctcgTCTCCGCATACGCCCCTGTTAGAGCTG
CAGATGTCGCTATTTGGGATTCTTTTCTTCAGAATCTTGTTAGCTGTATA
AATGCAAAACGTCCCAAA

Coding sequence (CDS) from alignment at sc0001638:30542..31359

>TCONS_00037465 ID=TCONS_00037465|Name=TCONS_00037465|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0001638:30542..31359 (Clytia hemisphaerica)
ATGCCAAAAGCGAAGAAATTCAAACATTTGAACATTATTACTCAAAACGT
AAGAGGATTAAAATCTGCTGAAAGAATCTATGAACTCTCGACCCAGATTA
AACGCCAGAATACATTTGCTCTTTGTGTCCAAGAATCATGGAGAAGTGGT
AAATCAATAGAACTTGTGAATGACTGTACCTTTCTTTTGCACGGTTTAAA
CGAATCAGATAACAAAAGTAAGCGTGGTCAAGGCGGTGTCGGTATTGTCC
TCAGTAAAACCGCAACCCAAGCCTGGAAAGAAGCAGGCTCATCTGTCTAC
ACCGATTTCGGTAAGCGTATAATTGCAACTAGGCTCTCATTGAAAGACaa
tcgaaacaaaaatattgatatttttctcgTCTCCGCATACGCCCCTGTTA
GAGCTGCAGATGTCGCTATTTGGGATTCTTTTCTTCAGAATCTTGTTAGC
TGTATAAATGCAAAACGTCCCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022232XLOC_022232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037465-exon-sc0001638-1491911889:30542..31359TCONS_00037465-exon-sc0001638-1491911889:30542..31359Clytia hemisphaericaexon
TCONS_00037465-exon-sc0001638-1510915933:30542..31359TCONS_00037465-exon-sc0001638-1510915933:30542..31359Clytia hemisphaericaexon
TCONS_00037465-exon-sc0001638-1575043694:30542..31359TCONS_00037465-exon-sc0001638-1575043694:30542..31359Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037465-proteinTCONS_00037465-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001638supercontigsc0001638:30542..31359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.5569	102.199	98.6231	99.2889	0.587319	0.633229	0.752924	0.211698	1.84844	2.71412	2.67439	1.56247	1.22991	0.940877	1.22318	1.69531	1.47229	1.5531	0.653026	1.35867	6.05042	4.87468	67.6843	56.0183	0.50308	0.56747	4.46298	5.2033	48.2175	64.0452
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037465 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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