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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037463 ID=TCONS_00037463|Name=TCONS_00037463|organism=Clytia hemisphaerica|type=transcript|length=973bp
GAGTGAATATATGTACTTGAAGTGGCCAAGGAAATGTTTAGACTGgcgat
ttgttctttttgtgACTTTGACGGGCATAAATAAGACCCTCCTGGAAATC
CGAATCTTCCCTTGGTAAAGAATAGAATGAATACTGTTCGTTCTTTTCAA
GGTTAAGGATAAAGGTAAATAATAACTAGCCTAAATAAAATACAATGCAA
TATAAAGAAATTGCagtctaatgtaaaaaagctcTAGAAAACTGTCTACA
GATTAAAATCCAGATTGGCAAACCAATTacatttgatttggttgttgGAT
ATGAGAGGATAGATTTCACTTCTTTTGGCATCCAAATATTGCTAATGTTA
ACAACTGGTTCATATCTTTTGAATAGCATTAAGCTGAAAATGCAAGCAAC
GTACAAGACATACAATCCAATGCTAGCTTTGAGTTTCCAAGTCATTATGA
ATGTACTTTTATTGcttttcaatttcttcatttccatttcaattttattc
agCTTTCGTTGaacttttgaatattttgcGAATTCTTCTTGCTTGCTAAT
AcctttttgttgatgttttaaATCAACAAACTCTGATGACAAAATGTTTA
GCCTTTGTTTGTGATTATTAAACATGTTATAAATCCAGCCAAGCAGCATA
CCCAAAAATGATATGACGGcttcaaataacaaaatacATAGAGCAATGTA
AAGGAAcaacattttcaagaaatttattTGCCAGCTGTAAATAGAAAACA
ATATTATGATGAAATTGTGAATgtttaatataataaaaacaagtgatact
tttatggacctaccttgttatgcatttaacacatatataattgatatcta
cgtgagcatgaacgttaaacaatcattcagagcactaatagtgacgattt
attaaaattagtcgtttgtttcttataaaaaaaacgtttagaaaccaaaa
tttcatgctcttgaaatattctt Run BLAST on NCBI protein sequence of TCONS_00037463-protein >TCONS_00037463-protein ID=TCONS_00037463-protein|Name=TCONS_00037463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
MLFLYIALCILLFEAVISFLGMLLGWIYNMFNNHKQRLNILSSEFVDLKH
QQKGISKQEEFAKYSKVQRKLNKIEMEMKKLKSNKSTFIMTWKLKASIGL
YVLYVACIFSLMLFKRYEPVVNISNIWMPKEVKSILSYPTTKSNVIGLPI
WILICRQFSRAFLH Run BLAST on NCBI transcript from alignment at sc0001637:2976..3948 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037463 ID=TCONS_00037463|Name=TCONS_00037463|organism=Clytia hemisphaerica|type=transcript|length=973bp|location=Sequence derived from alignment at sc0001637:2976..3948 (Clytia hemisphaerica)
aagaatatttcaagagcatgaaattttggtttctaaacgttttttttata
agaaacaaacgactaattttaataaatcgtcactattagtgctctgaatg
attgtttaacgttcatgctcacgtagatatcaattatatatgtgttaaat
gcataacaaggtaggtccataaaagtatcacttgtttttattatattaaa
cATTCACAATTTCATCATAATATTGTTTTCTATTTACAGCTGGCAaataa
atttcttgaaaatgttgTTCCTTTACATTGCTCTATgtattttgttattt
gaagCCGTCATATCATTTTTGGGTATGCTGCTTGGCTGGATTTATAACAT
GTTTAATAATCACAAACAAAGGCTAAACATTTTGTCATCAGAGTTTGTTG
ATttaaaacatcaacaaaaaggTATTAGCAAGCAAGAAGAATTCgcaaaa
tattcaaaagttCAACGAAAGctgaataaaattgaaatggaaatgaagaa
attgaaaagCAATAAAAGTACATTCATAATGACTTGGAAACTCAAAGCTA
GCATTGGATTGTATGTCTTGTACGTTGCTTGCATTTTCAGCTTAATGCTA
TTCAAAAGATATGAACCAGTTGTTAACATTAGCAATATTTGGATGCCAAA
AGAAGTGAAATCTATCCTCTCATATCcaacaaccaaatcaaatgtAATTG
GTTTGCCAATCTGGATTTTAATCTGTAGACAGTTTTCTAgagctttttta
cattagactGCAATTTCTTTATATTGCATTGTATTTTATTTAGGCTAGTT
ATTATTTACCTTTATCCTTAACCTTGAAAAGAACGAACAGTATTCATTCT
ATTCTTTACCAAGGGAAGATTCGGATTTCCAGGAGGGTCTTATTTATGCC
CGTCAAAGTcacaaaaagaacaaatcgcCAGTCTAAACATTTCCTTGGCC
ACTTCAAGTACATATATTCACTC Coding sequence (CDS) from alignment at sc0001637:2976..3948 >TCONS_00037463 ID=TCONS_00037463|Name=TCONS_00037463|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at sc0001637:2976..3948 (Clytia hemisphaerica)
atgttgTTCCTTTACATTGCTCTATgtattttgttatttgaagCCGTCAT
ATCATTTTTGGGTATGCTGCTTGGCTGGATTTATAACATGTTTAATAATC
ACAAACAAAGGCTAAACATTTTGTCATCAGAGTTTGTTGATttaaaacat
caacaaaaaggTATTAGCAAGCAAGAAGAATTCgcaaaatattcaaaagt
tCAACGAAAGctgaataaaattgaaatggaaatgaagaaattgaaaagCA
ATAAAAGTACATTCATAATGACTTGGAAACTCAAAGCTAGCATTGGATTG
TATGTCTTGTACGTTGCTTGCATTTTCAGCTTAATGCTATTCAAAAGATA
TGAACCAGTTGTTAACATTAGCAATATTTGGATGCCAAAAGAAGTGAAAT
CTATCCTCTCATATCcaacaaccaaatcaaatgtAATTGGTTTGCCAATC
TGGATTTTAATCTGTAGACAGTTTTCTAgagcttttttacattag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037463-exon-sc0001637-1491911889:2976..3948 | TCONS_00037463-exon-sc0001637-1491911889:2976..3948 | Clytia hemisphaerica | exon |
| TCONS_00037463-exon-sc0001637-1510915933:2976..3948 | TCONS_00037463-exon-sc0001637-1510915933:2976..3948 | Clytia hemisphaerica | exon |
| TCONS_00037463-exon-sc0001637-1575043694:2976..3948 | TCONS_00037463-exon-sc0001637-1575043694:2976..3948 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001637 | supercontig | sc0001637:2976..3948 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR028945 | WRB/Get1 |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0071816 | tail-anchored membrane protein insertion into ER membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0071816 |
tail-anchored membrane protein insertion into ER membrane |
Blast
The following BLAST results are available for this feature:
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