TCONS_00037451 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037451
Unique NameTCONS_00037451
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length220

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037451 ID=TCONS_00037451|Name=TCONS_00037451|organism=Clytia hemisphaerica|type=transcript|length=220bp
GGCTACTGCTGGTGGTAATTGTTTGTTCAACTCTTGCTCCATACTACTCA
TAGGAACTGAAAAACTAGCCAGAGATTTACGTGTTGCTGTTTCTATTGAG
TTGTTTCTCCAGCGTAAGTTCTATCGATGTCATCCGTTtctaacaaagaa
aattgatgagGACCCAACGTTAAAAATAGACAAGCTCAACAATACTATAG
TTAAGAAAGAATGCCATAAC
Run BLAST on NCBI

transcript from alignment at sc0001636:6011..6230

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037451 ID=TCONS_00037451|Name=TCONS_00037451|organism=Clytia hemisphaerica|type=transcript|length=220bp|location=Sequence derived from alignment at sc0001636:6011..6230 (Clytia hemisphaerica)
GTTATGGCATTCTTTCTTAACTATAGTATTGTTGAGCTTGTCTATTTTTA
ACGTTGGGTCctcatcaattttctttgttagaAACGGATGACATCGATAG
AACTTACGCTGGAGAAACAACTCAATAGAAACAGCAACACGTAAATCTCT
GGCTAGTTTTTCAGTTCCTATGAGTAGTATGGAGCAAGAGTTGAACAAAC
AATTACCACCAGCAGTAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022221XLOC_022221Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037451-exon-sc0001636-1491911889:6011..6230TCONS_00037451-exon-sc0001636-1491911889:6011..6230Clytia hemisphaericaexon
TCONS_00037451-exon-sc0001636-1510915933:6011..6230TCONS_00037451-exon-sc0001636-1510915933:6011..6230Clytia hemisphaericaexon
TCONS_00037451-exon-sc0001636-1575043694:6011..6230TCONS_00037451-exon-sc0001636-1575043694:6011..6230Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001636supercontigsc0001636:6011..6230 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	13.3467	19.7751	22.2673	44.6709	16.6801	9.03917	8.77364	18.1263	6.58221	10.2535	5.61986	8.29259	6.50096	7.61517	2.63019	17.89	9.56901	5.25086	2.83694	6.44797	0	0	5.08905	9.05195	5.49247	1.39899
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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