TCONS_00037450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037450
Unique NameTCONS_00037450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037450 ID=TCONS_00037450|Name=TCONS_00037450|organism=Clytia hemisphaerica|type=transcript|length=768bp
GAGACTCTCTAGTTGTTCAAAAAGATATCTGTGAATTGGAAAAGTGGTCC
CGAGATTGGTTACTAAAGTTTCATCCTGACAAATGCCATGTATTGACTAT
AGGTAAATTTGCTAATATTAAGCATGCACACAGATACCAACTTGGAGGTA
ACGaacttgaacatgtttttgaaaaaaaagacttAGGCATCTTGATTgac
tctgaattatcttttgaGGAACATATCTCTAGACAAGTCAATAAAGCGAA
TTCTATCTTAGGAGTCATTCAAAGAAGCTTTAGTGACCTGAGTCCTTCAG
CATTTTGCACATTGTATACGACCTTTGTCAGACCGCATCTAGAATATGCA
CAATCAGTATGGCAGCCGAAATTACGCCGCAGCGTTAATCTGATTGAAGG
GGTCCAAAGACGGGCAACAAGACTGATTCCGCAGTATCGTTATCTCCACT
ATGAGGAGCGTTTACAAAGACTCAAGCTTCCATCTCTTGAGTTTAGAAGA
CTTTTCTGCGATATGGTCCAAATGTATAAGCATATCCATTTTTTTGATAC
AAAAACAACTCGGGACAAGCTAGTTAAAAGAACTCGTCCAGCCAGATTTC
ACGATCACGAATTCGTTCCAAACTTTGCTGCTGATGGTCTTTGAGGAGCG
CAAACAAAGTCATTCTACTATAGAACAATCCCTACATGGAATGCATTGCC
ACGATTTGTCGTCGAGTCAACCTCCATTCACTTGTTTAAACAAAACCTTA
ATGAAGCGTGGAAAAGAC
Run BLAST on NCBI

protein sequence of TCONS_00037450-protein

>TCONS_00037450-protein ID=TCONS_00037450-protein|Name=TCONS_00037450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
DSLVVQKDICELEKWSRDWLLKFHPDKCHVLTIGKFANIKHAHRYQLGGN
ELEHVFEKKDLGILIDSELSFEEHISRQVNKANSILGVIQRSFSDLSPSA
FCTLYTTFVRPHLEYAQSVWQPKLRRSVNLIEGVQRRATRLIPQYRYLHY
EERLQRLKLPSLEFRRLFCDMVQMYKHIHFFDTKTTRDKLVKRTRPARFH
DHEFVPNFAADGL
Run BLAST on NCBI

transcript from alignment at sc0001635:41666..42433

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037450 ID=TCONS_00037450|Name=TCONS_00037450|organism=Clytia hemisphaerica|type=transcript|length=768bp|location=Sequence derived from alignment at sc0001635:41666..42433 (Clytia hemisphaerica)
GTCTTTTCCACGCTTCATTAAGGTTTTGTTTAAACAAGTGAATGGAGGTT
GACTCGACGACAAATCGTGGCAATGCATTCCATGTAGGGATTGTTCTATA
GTAGAATGACTTTGTTTGCGCTCCTCAAAGACCATCAGCAGCAAAGTTTG
GAACGAATTCGTGATCGTGAAATCTGGCTGGACGAGTTCTTTTAACTAGC
TTGTCCCGAGTTGTTTTTGTATCAAAAAAATGGATATGCTTATACATTTG
GACCATATCGCAGAAAAGTCTTCTAAACTCAAGAGATGGAAGCTTGAGTC
TTTGTAAACGCTCCTCATAGTGGAGATAACGATACTGCGGAATCAGTCTT
GTTGCCCGTCTTTGGACCCCTTCAATCAGATTAACGCTGCGGCGTAATTT
CGGCTGCCATACTGATTGTGCATATTCTAGATGCGGTCTGACAAAGGTCG
TATACAATGTGCAAAATGCTGAAGGACTCAGGTCACTAAAGCTTCTTTGA
ATGACTCCTAAGATAGAATTCGCTTTATTGACTTGTCTAGAGATATGTTC
CtcaaaagataattcagagtcAATCAAGATGCCTaagtcttttttttcaa
aaacatgttcaagttCGTTACCTCCAAGTTGGTATCTGTGTGCATGCTTA
ATATTAGCAAATTTACCTATAGTCAATACATGGCATTTGTCAGGATGAAA
CTTTAGTAACCAATCTCGGGACCACTTTTCCAATTCACAGATATCTTTTT
GAACAACTAGAGAGTCTC

Coding sequence (CDS) from alignment at sc0001635:41666..42433

>TCONS_00037450 ID=TCONS_00037450|Name=TCONS_00037450|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0001635:41666..42433 (Clytia hemisphaerica)
TCAAAGACCATCAGCAGCAAAGTTTGGAACGAATTCGTGATCGTGAAATC
TGGCTGGACGAGTTCTTTTAACTAGCTTGTCCCGAGTTGTTTTTGTATCA
AAAAAATGGATATGCTTATACATTTGGACCATATCGCAGAAAAGTCTTCT
AAACTCAAGAGATGGAAGCTTGAGTCTTTGTAAACGCTCCTCATAGTGGA
GATAACGATACTGCGGAATCAGTCTTGTTGCCCGTCTTTGGACCCCTTCA
ATCAGATTAACGCTGCGGCGTAATTTCGGCTGCCATACTGATTGTGCATA
TTCTAGATGCGGTCTGACAAAGGTCGTATACAATGTGCAAAATGCTGAAG
GACTCAGGTCACTAAAGCTTCTTTGAATGACTCCTAAGATAGAATTCGCT
TTATTGACTTGTCTAGAGATATGTTCCtcaaaagataattcagagtcAAT
CAAGATGCCTaagtcttttttttcaaaaacatgttcaagttCGTTACCTC
CAAGTTGGTATCTGTGTGCATGCTTAATATTAGCAAATTTACCTATAGTC
AATACATGGCATTTGTCAGGATGAAACTTTAGTAACCAATCTCGGGACCA
CTTTTCCAATTCACAGATATCTTTTTGAACAACTAGAGAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022220XLOC_022220Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037450-proteinTCONS_00037450-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037450-exon-sc0001635-1491911889:41666..42433TCONS_00037450-exon-sc0001635-1491911889:41666..42433Clytia hemisphaericaexon
TCONS_00037450-exon-sc0001635-1510915933:41666..42433TCONS_00037450-exon-sc0001635-1510915933:41666..42433Clytia hemisphaericaexon
TCONS_00037450-exon-sc0001635-1575043694:41666..42433TCONS_00037450-exon-sc0001635-1575043694:41666..42433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001635supercontigsc0001635:41666..42433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.697471	1.21605	1.44127	1.20957	2.59619	2.40908	0.798094	1.14526	0.936776	1.15565	1.31958	0.512137	3.44539	2.3091	1.23765	1.61511	0.462919	0.292732	1.59564	3.24804	0.972705	0.743186	2.18753	1.15747	3.10924	2.25282	1.11496	1.43457	0.385816	0.270409
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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