TCONS_00037441 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037441
Unique NameTCONS_00037441
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037441 ID=TCONS_00037441|Name=TCONS_00037441|organism=Clytia hemisphaerica|type=transcript|length=488bp
CATGATGTGTTAAAAGACTTCATCAAGCACTGAAACTGTACAACTCTCTG
CaccataaagaaaaaattcagatAGCCTACACTACATGATCTGACAGACA
GAACGAGAAAGgGAACACCATGAACTGACACGATTTTTGAagaaagctga
ttggcttatGATCCTTAAATCGAGTCATTTGGCAAGTGACGGTTACtgat
ttctttgatgttttgagTGTTTGTTTCAAGAGCTAAAAGTTGCTTGAAAT
AGGATACTGATCTTGGAATTTTATAATAAAGAAAGTTTGACCAAAGTTTA
ACTTAATTGACTAATACTCTTAAGTTTTTGCCCTCATACATTGTATACAT
agcatttgtatttttttctgtatttttttacCTTGTAATTAGATTATCTA
AATATTATATTTACTTTATCTTATTTAATATGAATTTTTAGTTCTTCTAA
AGATGAAATAGATCAGTAAcatgaaatgtaaaaaaaaa
Run BLAST on NCBI

transcript from alignment at sc0001630:31161..32638-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037441 ID=TCONS_00037441|Name=TCONS_00037441|organism=Clytia hemisphaerica|type=transcript|length=1478bp|location=Sequence derived from alignment at sc0001630:31161..32638- (Clytia hemisphaerica)
CATGATGTGTAAGTATTACTTCACCCATTTATATCAACAAATGAGTCTAG
TTAGTGCTATTTCTATCTATCCTAAACTAAGGGTCGATCAGACAACACTC
ATTTAAGGATTTTTTTGTATCTTTAATTTGTCATGTCATTCACCCAGATC
AGAGGTATATTTTCTACTTTTTTTTACTTTTTTGTAATAATGTTGTTTTC
CTTTGCTGTTCATTTGTTGTCACAATGTTTGACTCTTTTGTCTTTCTACA
CTACAGGTCGTGATGCTGTATCATAACATAAACTCCACGAAACCATTTCT
CGTCAAGTAATTATCAAGGGTAAGGTAAGGGAATTATCTGCTTATTTGTA
TGCTACTTTTTTTAAAAGAACTATAAGCTGGATAATTTGCTATTTATGTA
GGTATTTCAAAATATTTTTTTTGAGCAATGAAATGTTTTTGGCAAAGCTT
TCTTCTCAATTTTTGACTATTCTGAGATATGATTAAAATGAATATCTTTG
TTTGTGAATGAATGATGGAGCAATATACATCAGTTTAGTTTATTTTTTAT
ACAGGTTAAAAGACTTCATCAAGCACTGAAACTGTACAACTCTCTGCACC
ATAAAGAAAAAATTCAGATAGCCTACACTACATGATCTGACAGACAGAAC
GAGAAAGGTATTTATCACAGAATTCAATTAAATTTTTTCAACTATTCCTA
GTCCATTTGCTTTACAAGGTAACCTTTTCTCTCGAAACTAGAGATCAAAT
GTATATAAAGTGATTTTACTAAACTGTTGTTTTATAGCCAATGTTTTGTT
ACTTTCTGATGGGGTCGATTATTTTGATTATTTTGGACCATTTTCAGGGT
AGAAAAGAGAAAATTTAAAAATTTTTCGGCTACTTTTATTAATTTTTGCC
ACTCCAGGCCGAAAATGGGAGATCTTTTAATTTTTTGTTCTGACAGGGTT
CCAATTTTGCCAAAAGTTCACATCTGACAGGATCAACTTTCCAAACTCCA
GTGGTACTTCCCCGTCGGCCGTCAAGGATTATTCGTGATAAGATTCATAT
TTATTTTAGAAAGTTTGACCATATTATTATCGATTTTCAATTTTTCTTCA
GGGAACACCATGAACTGACACGATTTTTGAAGAAAGCTGATTGGCTTATG
ATCCTTAAATCGAGTCATTTGGCAAGTGACGGTTACTGATTTCTTTGATG
TTTTGAGTGTTTGTTTCAAGAGCTAAAAGTTGCTTGAAATAGGATACTGA
TCTTGGAATTTTATAATAAAGAAAGTTTGACCAAAGTTTAACTTAATTGA
CTAATACTCTTAAGTTTTTGCCCTCATACATTGTATACATAGCATTTGTA
TTTTTTTCTGTATTTTTTTACCTTGTAATTAGATTATCTAAATATTATAT
TTACTTTATCTTATTTAATATGAATTTTTAGTTCTTCTAAAGATGAAATA
GATCAGTAACATGAAATGTAAAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022214XLOC_022214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037441-exon-sc0001630-1575043694:32631..32638TCONS_00037441-exon-sc0001630-1575043694:32631..32638Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1575043694:31982..32084TCONS_00037441-exon-sc0001630-1575043694:31982..32084Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1575043694:31161..31537TCONS_00037441-exon-sc0001630-1575043694:31161..31537Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1510915933:32631..32638TCONS_00037441-exon-sc0001630-1510915933:32631..32638Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1510915933:31982..32084TCONS_00037441-exon-sc0001630-1510915933:31982..32084Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1510915933:31161..31537TCONS_00037441-exon-sc0001630-1510915933:31161..31537Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1491911889:32631..32638TCONS_00037441-exon-sc0001630-1491911889:32631..32638Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1491911889:31982..32084TCONS_00037441-exon-sc0001630-1491911889:31982..32084Clytia hemisphaericaexon
TCONS_00037441-exon-sc0001630-1491911889:31161..31537TCONS_00037441-exon-sc0001630-1491911889:31161..31537Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001630supercontigsc0001630:31161..32638 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0306649	0.130401	0.125901	0	0	0	0	0	8.02198	4.69114	5.15381	8.27512	0	0	0	0	0.569186	0.068874	0	0	1.88062	0.748957	1.33041	3.95811	0	0	4.3849	3.48968	2.97227	3.40429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037441 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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