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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037431 ID=TCONS_00037431|Name=TCONS_00037431|organism=Clytia hemisphaerica|type=transcript|length=1760bp
GGAAAATTCGATCAGTTTCCTACCTCTTGTGCCAAACTCAACCCATCTTT
GCCAGCCGTTGGATGTGGCAGTATTCAAGCCACTGAAGCAAGTTTGGAGC
AGTGTGCTACGAAAGTGGCGCTCGGAGACAGACATGAAGAAGGAAATCCC
CAAGACATCGTTTCCCTTACTGTTAAGGCGGACGTGCATAAATCTCAAAC
CTAAGAACCTGAAGTCCAGTAACTTTTTTTAGCACATCTTTACCACCATT
TGTTTTGTTTGCCACAAAGTGGGAGACATACGGAGTATGTTGCCATCAAT
ATTCGCTTTATGGGTATGACATTCTTGCCCGGGATATAAGACCATTTCTC
CCTCAATTGAAAAATAATCCTTTTGATAAGAACAGGAAGAAAACAATGAC
GGTTTGCTTTCAACACAGGGGtttaaaacattaaactaaTAGCTAGGTAT
TCTTTATCATTTTTAGGATTTCGTACATGTGGTATTGCTACAGTGAACAA
AGATGAAATCCTGAGAAAAATCCCCCAGAGGAAAGAAATGTTACGGACGT
TCTGAAGCAGGGGACGGTAGAACTCCTGAAAGAAATGTACCCAAAAAACA
CAACTCAGACACAGAAGAGAGGCCGTAAAGTCGAACACGGCCGTAACGTT
CCAACACAGTGTtggaagatgaagatgaagaggaagaagaagaagaagta
aCGGACTGGTCCGACGAAGAAAGTGAAGACGAAGAACTAGACGGTGAAGA
GGTTAATGAAGATCTTGGTGACCAAAATGaaaatcgagtgaaaatcgGGA
AGAGCTAGATGAGGACATAGTAAGTGACATTCACTGCGGTATATAACTAA
CCATTTGGGGCTATTTTTATCATGTCACCCTACATTCGGGAGGATATCGG
AAGACCATAGGGATTATTCGACAAGATCTTATTTATAACCTCTATTATCA
AATAGGTATGCGATTAGGCCGTCCCGGCCATCTTTGAACAAGGACATAAA
ATGACACTCAGGGTTGTGTTTGTTCGAGTATTAACCTCAATAATGTGCCC
TTAAATGATTATGCTGTTGATTACGAGTTCGACAAGAACGTTTCACCCTA
TGAAGAAGACGACTAAGATGACAAGCTGTCAGAGGGTGTTTGCACAGTGG
AAATCAACAGACCAAAAAGGCAGGAGCCATTGGCATGTCAAGTAGACAAT
GAACAAaatgatgatgaagaagaagaaggacaATGGAGTACACGTATTTC
CTATTAGCggattcatgaaaaaagtcacgaaaaacgtcgagaaagtctct
gattggctgaaatattgcatatacaagcatatttttcaaaatgttcagag
tatgaggtaatctttgcatgcctccgccaatcaaaagtttgtttactcga
agttttttcgtgacttttgcatgaatctgctaataggaaataggtgTATT
GCTTCAAGTGTAAAAAAGATTATGATGATACCAATGAAGAACTGCAAGAC
ATTTTAATAGCATCTGCCGGTATATATTCGGTTCTTGGTTGCCGTTGGAA
CCATAGAAGCATAGAACCAAAGGAAAATAGTGTCAGTGTTTAACATGACT
CGCAACATAAGTTAATCATAGCATGCTAAAGCTTATTCGTGGCCATGAAA
AGCTCATAGACACCCAAATAAGATCTAACCTGTCAGCATGCGTAAGTAGA
ATATATCACACAAAATCGTTATTTCATAGATGCGAGTTTCACAATTGTCG
GAAACGCTTC Run BLAST on NCBI transcript from alignment at sc0001628:39653..41641+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037431 ID=TCONS_00037431|Name=TCONS_00037431|organism=Clytia hemisphaerica|type=transcript|length=1989bp|location=Sequence derived from alignment at sc0001628:39653..41641+ (Clytia hemisphaerica)
GGAAAATTCGATCAGTTTCCTACCTCTTGTGCCAAACTCAACCCATCTTT
GCCAGCCGTTGGATGTGGCAGTATTCAAGCCACTGAAGCAAGTTTGGAGC
AGTGTGCTACGAAAGTGGCGCTCGGAGACAGACATGAAGAAGGAAATCCC
CAAGACATCGTTTCCCTTACTGTTAAGGCGGACGTGCATAAATCTCAAAC
CTAAGAACCTGAAGTCCAGTAACTTTTTTTAGCACATCTTTACCACCATT
TGTTTTGTTTGCCACAAAGTGGGAGACATACGGAGTATGTTGCCATCAAT
ATTCGCTTTATGGGTATGACATTCTTGCCCGGGATATAAGACCATTTCTC
CCTCAATTGAAAAATAATCCTTTTGATAAGAACAGGAAGAAAACAATGAC
GGTTTGCTTTCAACACAGGGGtttaaaacattaaactaaTAGCTAGGTAT
TCTTTATCATTTTTAGGATTTCGTACATGTGGTATTGCTACAGTGAACAA
AGATGAAATCCTGAGAAAAATCCCCCAGAGGAAAGAAATGTTACGGACGT
TCTGAAGCAGGGGACGGTAGAACTCCTGAAAGAAATGTACCCAAAAAACA
CAAGTAAGGCCGCGttatttaaaaagaacaatTCTGTGATTTGTGCAGAG
TATGCATAGAATCGATTCTAaagtaccttaagtggataaattttgacgtt
gatttaatttggcgattggccaaaatacgattttttggcggggatttaat
ttggtttAATCCCCACCAAACTTTATCCACTTGTGGTAATTTTCGGTGAA
TTTAGTTTCCCACTATACCATATTACAGCCAGCTCAGACACAGAAGAGAG
GCCGTAAAGTCGAACACGGCCGTAACGTTCCAACACAGTGTtggaagatg
aagatgaagaggaagaagaagaagaagtaaCGGACTGGTCCGACGAAGAA
AGTGAAGACGAAGAACTAGACGGTGAAGAGGTTAATGAAGATCTTGGTGA
CCAAAATGaaaatcgagtgaaaatcgGGAAGAGCTAGATGAGGACATAGT
AAGTGACATTCACTGCGGTATATAACTAACCATTTGGGGCTATTTTTATC
ATGTCACCCTACATTCGGGAGGATATCGGAAGACCATAGGGATTATTCGA
CAAGATCTTATTTATAACCTCTATTATCAAATAGGTATGCGATTAGGCCG
TCCCGGCCATCTTTGAACAAGGACATAAAATGACACTCAGGGTTGTGTTT
GTTCGAGTATTAACCTCAATAATGTGCCCTTAAATGATTATGCTGTTGAT
TACGAGTTCGACAAGAACGTTTCACCCTATGAAGAAGACGACTAAGATGA
CAAGCTGTCAGAGGGTGTTTGCACAGTGGAAATCAACAGACCAAAAAGGC
AGGAGCCATTGGCATGTCAAGTAGACAATGAACAAaatgatgatgaagaa
gaagaaggacaATGGAGTACACGTATTTCCTATTAGCggattcatgaaaa
aagtcacgaaaaacgtcgagaaagtctctgattggctgaaatattgcata
tacaagcatatttttcaaaatgttcagagtatgaggtaatctttgcatgc
ctccgccaatcaaaagtttgtttactcgaagttttttcgtgacttttgca
tgaatctgctaataggaaataggtgTATTGCTTCAAGTGTAAAAAAGATT
ATGATGATACCAATGAAGAACTGCAAGACATTTTAATAGCATCTGCCGGT
ATATATTCGGTTCTTGGTTGCCGTTGGAACCATAGAAGCATAGAACCAAA
GGAAAATAGTGTCAGTGTTTAACATGACTCGCAACATAAGTTAATCATAG
CATGCTAAAGCTTATTCGTGGCCATGAAAAGCTCATAGACACCCAAATAA
GATCTAACCTGTCAGCATGCGTAAGTAGAATATATCACACAAAATCGTTA
TTTCATAGATGCGAGTTTCACAATTGTCGGAAACGCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037431-exon-sc0001628-1491911889:39653..40255 | TCONS_00037431-exon-sc0001628-1491911889:39653..40255 | Clytia hemisphaerica | exon |
| TCONS_00037431-exon-sc0001628-1510915933:39653..40255 | TCONS_00037431-exon-sc0001628-1510915933:39653..40255 | Clytia hemisphaerica | exon |
| TCONS_00037431-exon-sc0001628-1575043694:39653..40255 | TCONS_00037431-exon-sc0001628-1575043694:39653..40255 | Clytia hemisphaerica | exon |
| TCONS_00037431-exon-sc0001628-1491911889:40485..41641 | TCONS_00037431-exon-sc0001628-1491911889:40485..41641 | Clytia hemisphaerica | exon |
| TCONS_00037431-exon-sc0001628-1510915933:40485..41641 | TCONS_00037431-exon-sc0001628-1510915933:40485..41641 | Clytia hemisphaerica | exon |
| TCONS_00037431-exon-sc0001628-1575043694:40485..41641 | TCONS_00037431-exon-sc0001628-1575043694:40485..41641 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001628 | supercontig | sc0001628:39653..41641 + |
Blast
The following BLAST results are available for this feature:
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