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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037428 ID=TCONS_00037428|Name=TCONS_00037428|organism=Clytia hemisphaerica|type=transcript|length=811bp
gatgaagcaTCAATGATCCCCAAACATGCTCTTGAAGCTGTAGATAGAAT
GTTGAGGGATATTTGTAACAGTGGCGTACCATTTGCTGGAAAAGTTGTTT
TGTTAGGTGGCGACTTTCGACAAACCCTTCCGGTTGTAAAAAGAGGAAGT
CCAGCCCAGGTTATTGAAAGTTGCTTGAAAAGAAGTCCTCTTTGGCCTCT
AGCACAAGTATTTCATTTGAATCAAAACATGCGGACAGGTATCGGGGAGC
AAGAATTTTCCAACTTTCTTTTGCGATTGGGTGAGGGTGCTTTGCCAATG
AAAGCTCATGAACCATATCTAGGGTGCATCGAAATTCCAGAACAATGTGT
GCTCCCAAAAGACTCTGATCTGATTCAACAAATCTTCGGAAATTTTGCAG
ATGGTGAGGACCTAACAAAACGGGTGATTTTAACTCCAACAAATGAAAAA
GCCTTTTGCAACGTCAGACGGGGGATGTCTGTACTTATTTCAGTTTTGAT
TCGGTGGTTGCTGGTACACAGGAGGAAGTTGATCTTTATCCTCAAGAGTT
TCTAAACTCAATTACCCCAAGTGGAATGCCTAGACACAAGTTAAATCTTA
AAGTGGGGTCTGTGGTAATGTTACTTCGTAATTTGTCCCTGAAAGATGGT
CTTTGTAATGGAACGCGTCTCAAGGTCTGTAATTTACAAGACAATCTCAT
TGATGCAGAAATTCTTACTGGTTTTTTTGCTGGTCAAAGAACTTTGATTC
CCAGGATCACATTTTGTCCCAACGACACAAATTTACCATTTCAACTGAAA
AGGGTCCAGTT Run BLAST on NCBI protein sequence of TCONS_00037428-protein >TCONS_00037428-protein ID=TCONS_00037428-protein|Name=TCONS_00037428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
DEASMIPKHALEAVDRMLRDICNSGVPFAGKVVLLGGDFRQTLPVVKRGS
PAQVIESCLKRSPLWPLAQVFHLNQNMRTGIGEQEFSNFLLRLGEGALPM
KAHEPYLGCIEIPEQCVLPKDSDLIQQIFGNFADGEDLTKRVILTPTNEK
AFCNVRRGMSVLISVLIRWLLVHRRKLIFILKSF Run BLAST on NCBI transcript from alignment at sc0001626:32715..33525 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037428 ID=TCONS_00037428|Name=TCONS_00037428|organism=Clytia hemisphaerica|type=transcript|length=811bp|location=Sequence derived from alignment at sc0001626:32715..33525 (Clytia hemisphaerica)
AACTGGACCCTTTTCAGTTGAAATGGTAAATTTGTGTCGTTGGGACAAAA
TGTGATCCTGGGAATCAAAGTTCTTTGACCAGCAAAAAAACCAGTAAGAA
TTTCTGCATCAATGAGATTGTCTTGTAAATTACAGACCTTGAGACGCGTT
CCATTACAAAGACCATCTTTCAGGGACAAATTACGAAGTAACATTACCAC
AGACCCCACTTTAAGATTTAACTTGTGTCTAGGCATTCCACTTGGGGTAA
TTGAGTTTAGAAACTCTTGAGGATAAAGATCAACTTCCTCCTGTGTACCA
GCAACCACCGAATCAAAACTGAAATAAGTACAGACATCCCCCGTCTGACG
TTGCAAAAGGCTTTTTCATTTGTTGGAGTTAAAATCACCCGTTTTGTTAG
GTCCTCACCATCTGCAAAATTTCCGAAGATTTGTTGAATCAGATCAGAGT
CTTTTGGGAGCACACATTGTTCTGGAATTTCGATGCACCCTAGATATGGT
TCATGAGCTTTCATTGGCAAAGCACCCTCACCCAATCGCAAAAGAAAGTT
GGAAAATTCTTGCTCCCCGATACCTGTCCGCATGTTTTGATTCAAATGAA
ATACTTGTGCTAGAGGCCAAAGAGGACTTCTTTTCAAGCAACTTTCAATA
ACCTGGGCTGGACTTCCTCTTTTTACAACCGGAAGGGTTTGTCGAAAGTC
GCCACCTAACAAAACAACTTTTCCAGCAAATGGTACGCCACTGTTACAAA
TATCCCTCAACATTCTATCTACAGCTTCAAGAGCATGTTTGGGGATCATT
GAtgcttcatc Coding sequence (CDS) from alignment at sc0001626:32715..33525 >TCONS_00037428 ID=TCONS_00037428|Name=TCONS_00037428|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at sc0001626:32715..33525 (Clytia hemisphaerica)
TTAGAAACTCTTGAGGATAAAGATCAACTTCCTCCTGTGTACCAGCAACC
ACCGAATCAAAACTGAAATAAGTACAGACATCCCCCGTCTGACGTTGCAA
AAGGCTTTTTCATTTGTTGGAGTTAAAATCACCCGTTTTGTTAGGTCCTC
ACCATCTGCAAAATTTCCGAAGATTTGTTGAATCAGATCAGAGTCTTTTG
GGAGCACACATTGTTCTGGAATTTCGATGCACCCTAGATATGGTTCATGA
GCTTTCATTGGCAAAGCACCCTCACCCAATCGCAAAAGAAAGTTGGAAAA
TTCTTGCTCCCCGATACCTGTCCGCATGTTTTGATTCAAATGAAATACTT
GTGCTAGAGGCCAAAGAGGACTTCTTTTCAAGCAACTTTCAATAACCTGG
GCTGGACTTCCTCTTTTTACAACCGGAAGGGTTTGTCGAAAGTCGCCACC
TAACAAAACAACTTTTCCAGCAAATGGTACGCCACTGTTACAAATATCCC
TCAACATTCTATCTACAGCTTCAAGAGCATGTTTGGGGATCATTGAtgct
tcatc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037428-exon-sc0001626-1491911889:32715..33525 | TCONS_00037428-exon-sc0001626-1491911889:32715..33525 | Clytia hemisphaerica | exon |
| TCONS_00037428-exon-sc0001626-1510915933:32715..33525 | TCONS_00037428-exon-sc0001626-1510915933:32715..33525 | Clytia hemisphaerica | exon |
| TCONS_00037428-exon-sc0001626-1575043694:32715..33525 | TCONS_00037428-exon-sc0001626-1575043694:32715..33525 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001626 | supercontig | sc0001626:32715..33525 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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