TCONS_00037420 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037420
Unique NameTCONS_00037420
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037420 ID=TCONS_00037420|Name=TCONS_00037420|organism=Clytia hemisphaerica|type=transcript|length=212bp
CgttgtagccctaacgatagttcaacttcataaaaagttgtatCAGAGCC
TGCTGTTACATATTACTTATCATTTATAGACATAAAATTTAAACTTGAAT
TAGTTTTTTCCAACGGAAATCTGAATCAAAGTCGATCGGATACAACCTGA
ATTGaggcattttttaaataaatcttctctaaatcgaaatctattggaat
taagttatgatg
Run BLAST on NCBI

transcript from alignment at sc0001625:105073..105284

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037420 ID=TCONS_00037420|Name=TCONS_00037420|organism=Clytia hemisphaerica|type=transcript|length=212bp|location=Sequence derived from alignment at sc0001625:105073..105284 (Clytia hemisphaerica)
catcataacttaattccaatagatttcgatttagagaagatttatttaaa
aaatgcctCAATTCAGGTTGTATCCGATCGACTTTGATTCAGATTTCCGT
TGGAAAAAACTAATTCAAGTTTAAATTTTATGTCTATAAATGATAAGTAA
TATGTAACAGCAGGCTCTGatacaactttttatgaagttgaactatcgtt
agggctacaacG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022195XLOC_022195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037420-exon-sc0001625-1491911889:105073..105284TCONS_00037420-exon-sc0001625-1491911889:105073..105284Clytia hemisphaericaexon
TCONS_00037420-exon-sc0001625-1510915933:105073..105284TCONS_00037420-exon-sc0001625-1510915933:105073..105284Clytia hemisphaericaexon
TCONS_00037420-exon-sc0001625-1575043694:105073..105284TCONS_00037420-exon-sc0001625-1575043694:105073..105284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001625supercontigsc0001625:105073..105284 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.39847	2.26425	1.58342	3.09825	5.65774	8.76556	6.78596	7.13319	3.53539	10.0659	1.41684	5.58823	1.86016	2.52761	2.00298	0.852187	4.1993	1.07604	1.4866	1.55562	12.7242	11.1989	0	2.91555	0	4.02009	5.75273	4.09298	3.10438	4.74431
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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