TCONS_00037411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037411
Unique NameTCONS_00037411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length519

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037411 ID=TCONS_00037411|Name=TCONS_00037411|organism=Clytia hemisphaerica|type=transcript|length=519bp
GTGTAATGAACGACGGTCGCTTTTCTGCCGCTCTCATAAGCAACAATACC
CAAATATGTATGATGGACAAATGGCTTGTCGATGTCGTGTGAGGATGCAA
AACGTGTGCTGCAAGGTGAGTTGAAACTATTTTGAGCTTTCCTATCGACC
CCTTCGATATGCTTTCATGCTACTTACGGTTTTGCTCTTAGTAAAGGAAA
TTTTTCGGTCATTAATCCATCTCGTTTTCTCTCCCTTTCAGGTGGAATGA
ATTTCTTACCTAAAAAACACAAATCCGGTCTTCGCGTAAATTACAACTCG
GGATTTTTCATAACGACGAACGTGTATCCCGACTTTGGAAACGAGCGTGA
CAACGAAGCTATCGAAAAGCGTCTGGAAGTATTCCAAACTTCATCCTGGA
AACGTAGAGATCCATCGGTCGCAGCGTGGTTACGAATGAACTGCATGGAA
GTGTTACACTACGTGGCGAACGAGTTGAGAGGAGAACTAATTTTCGATAC
ACCGCCTAAGAGATGGAAC
Run BLAST on NCBI

transcript from alignment at sc0001625:57116..57761-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037411 ID=TCONS_00037411|Name=TCONS_00037411|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at sc0001625:57116..57761- (Clytia hemisphaerica)
GTGTAATGAACGACGGTCGCTTTTCTGCCGCTCTCATAAGCAACAATACC
CAAATATGTATGATGGACAAATGGCTTGTCGATGTCGTGTGAGGATGCAA
AACGTGTGCTGCAAGGTGAGTTGAAACTATTTTGAGCTTTCCTATCGACC
CCTTCGATATGCTTTCATGCTACTTACGGTTTTGCTCTTAGTAAAGGAAA
TTTTTCGGTCATTAATCCATCTCGTTTTCTCTCCCTTTCAGGTGGAATGA
ATTTCTTACCTAAAAAACACAAATCCGGTCTTCGCGTAAATTACAACTCG
GGATTTTTCATAACGACGAACGTGTATCCCGACTTTGGAAACGAGCGTGA
CAACGAAGCTATCGAAAAGCGTCTGGAAGTATTCCAAACTTCATCCTGGA
AACGTAGAGATCCATCGGTCGCAGGTAAGAAAGTGGCATTTAACTCACAA
AAAATTTTTTTTTGCCATCCACCGTTCGTCGAGATTAAATCCATCCGCTG
TTGCTGATGACTGGAGTCTAAAGTTTCCTTTCCATCTTTTTTTTGTTGTA
GCGTGGTTACGAATGAACTGCATGGAAGTGTTACACTACGTGGCGAACGA
GTTGAGAGGAGAACTAATTTTCGATACACCGCCTAAGAGATGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022186XLOC_022186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037411-exon-sc0001625-1575043694:57338..57761TCONS_00037411-exon-sc0001625-1575043694:57338..57761Clytia hemisphaericaexon
TCONS_00037411-exon-sc0001625-1575043694:57116..57210TCONS_00037411-exon-sc0001625-1575043694:57116..57210Clytia hemisphaericaexon
TCONS_00037411-exon-sc0001625-1510915933:57338..57761TCONS_00037411-exon-sc0001625-1510915933:57338..57761Clytia hemisphaericaexon
TCONS_00037411-exon-sc0001625-1510915933:57116..57210TCONS_00037411-exon-sc0001625-1510915933:57116..57210Clytia hemisphaericaexon
TCONS_00037411-exon-sc0001625-1491911889:57338..57761TCONS_00037411-exon-sc0001625-1491911889:57338..57761Clytia hemisphaericaexon
TCONS_00037411-exon-sc0001625-1491911889:57116..57210TCONS_00037411-exon-sc0001625-1491911889:57116..57210Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001625supercontigsc0001625:57116..57761 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.632206	0.590697	0.774251	0	1.13455	1.82936	1.51746	3.23903	0.38576	0.868656	1.04353	0.77836	0.403864	0.474267	1.37398	0.697392	0.465325	0.277305	0.388023	0.127305	0.221303	0.365252	0	0.682633	1.38682	2.3029	0.156926	0	1.05985	0.40833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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