TCONS_00037408 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037408
Unique NameTCONS_00037408
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length992

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037408 ID=TCONS_00037408|Name=TCONS_00037408|organism=Clytia hemisphaerica|type=transcript|length=992bp
TGTCAAATAAGGGCTGTCCAACTGTGCCATTGATGCCTACTAATTGTCAA
TCGTGCAATAGCAGCAAAGTCGAGAGGCTACCAGGTGATTGTGTGGCTGT
TGTAACACTTTCAGGCAAGTATTACCTCCATCTCTTCTCATTGAAATGTG
AAGATTGCCAGACGACCACCAATCCTTTCACTTTGGACAGTGTCATAGAA
TCAGGATTTTGGCCAAGTTCCCCAGTTAAATTCAGTTATCTTTTTAAAGT
GGGTGTTTTTCGATTTTGGGACACACTGCGAAAAAATGCTCCTGGAACAT
CGGAAGCAGCATTTGTCGAAGTGTTGAATACAATGAGGGCATTTCACGGA
AGAGAAAATatGGGAAAAATAACCCCTACGATTTTCTCGACGTCATttaa
agaatggtgtttttGTCAGCATCAAATCGAAAGAATCCAAAAGAAGAATT
GGATGCAGTGTCCCTCGTGCACTTTCGACCAGCATTCTTGTCACGTGGAT
GGGAATTGTAAACTTTATCGCTACCGCAGTTCTGGGAGaCGCACAAGAAA
GGAATTTTACAATGGTTTGTTCATTGCTGAAGACAAGAAAGTTGGAAGTT
TTATCAATGAAATATACAAAGGCAAATTTGGAAAGGTGGAAGCAGATTAC
ATTTGTGGTGGAAAATGGAACGCTGCAAGAAACAACGCACGCAAATTTAA
ATCCCTTGACACAACTGGGCTTGAAGTGATGTCATGCCGCCATCAGCTTG
GGCAAAGAGCTCTTAATATGAAGCAAGGGGAATTATACGGATACCCATTA
TACCTGATAAAGGAGCACATCAACACAAGAGATATCAAGTTCGTTTTTGC
TGACGTGATGTGCAAGCTATCGAAGTTTATCCAACGCGTTGATGCCGAAA
CAGCCAAAGCTTTCAAAGGAGCTTTGTCTGTGATGCACGCCAAAGGCCAC
GGAATAGACTGTCAAGTATTTATTCATTTAGATGATTTAAGC
Run BLAST on NCBI

transcript from alignment at sc0001625:77914..80487+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037408 ID=TCONS_00037408|Name=TCONS_00037408|organism=Clytia hemisphaerica|type=transcript|length=2574bp|location=Sequence derived from alignment at sc0001625:77914..80487+ (Clytia hemisphaerica)
TGTCAAATAAGGGCTGTATGTCATCAAACAAATTAATTCTTTTAACTAAA
GTAGATACACATATTAACTATACAACTACTCACTTGAGTCTTCTCTAatg
aatttatgaatttttatgaTTTATCATCATTTACAGGTCCAACTGTGCCA
TTGATGCCTACTAATTGTCAATCGTGCAATAGCAGCAAAGTCGAGAGGCT
ACCAGGTGATTGTGTGGCTGTTGTAACACTTTCAGGTAAGTAAATATTAG
TTTCAGATCCTAATATAACATTCATAACAGAACTTAAAGTGAACGATTGC
TGATAAGAAAGAAGTGTTTGCGCAGTCATTTATTATATCCCCAAAAAGCA
TCTTCAACTTTGACCAAAGAatgcttatcaaaaaatcaATAGATTCATGT
TTTCATAGAAGATAATTTGCACACAGCTATCAAAAAGGACATATGATTCA
CAACGAAAAACACGGGAAAAGATCTCTTTTGAGATGAAAACAttagaaat
tattttattcatCGTCAGTCTTGTTTTTTTGGGGGTTTCCACTTTCATGA
AATTCGTTTACAGTTTACAGTCTTCTTTATTAATTGATGTAAGTCAAAAC
CACGTTCGCTTTTTGAATCGAATTCGAAGAAGCCAATCCGTTTCCACGCT
GACGTCAGCCAGCGTAAGTTTCATTGTATTCCATGGAAGTGCCACCTGGG
GTCCCCTATTTATCGCTGCAGTATTTCTTTAACCAACCCTGCATAAGATT
AACGTTACATTTTTTTCAGGCAAGTATTACCTCCATCTCTTCTCATTGAA
ATGTGAAGATTGCCAGACGACCACCAATCCTTTCACTTTGGACAGTGTCA
TAGAATCAGGATTTTGGCCAAGTTCCCCAGTTAAATTCAGTTATCTTTTT
AAAGTGGGTGTTTTTCGATTTTGGGACACACTGCGAAAAAATGCTCCTGG
AACATCGGAAGCAGCATTTGTCGAAGTGTTGAATACAATGAGGGCATTTC
ACGGAAGAGAAAATGTAATTTCTTTCATTaactaatttttgaattttaat
ataaACATCCCTTTTTCTGGTGTTGATTTATTTAATTGGAATATCTATTT
AAGCTGTTTTGTTATAGTTGAAACACGCCTGTCTCAGTTACCCAATTTTA
GGACTTTTTTGATGGGATGAGCTTTCTTCTCACTTGGGAAAATGTTTTGC
CAATTTTTACGTTGGGAAACAGTATACCAGGTTTTTCCTATAGGAATAAa
ttaggaaatatttttttataaatactgGTATGGAGTTTTGCAATGATTGT
AATGCTATCTttaccaaaaactgatttttaattttactattgagatttat
tttcattttatagatGGGAAAAATAACCCCTACGATTTTCTCGACGTCAT
ttaaagaatggtgtttttGTCAGCATCAAATCGAAAGAATCCAAAAGAAG
AATTGGATGCAGTGTCCCTCGTGCACTTTCGACCAGCATTCTTGTCACGT
GGATGGGAATTGTAAACTTTATCGCTACCGCAGTTCTGGGAGGTTCTTAT
ACATCGATTTAAGTTTTCGAATCATTTCTACAATGAATAAGCTATTTGGT
GTATATTTCTTTCGAATTAGATCATTTTACTCACTCTTATGTACTTGATT
GTAGGGGGGTTCGACACTCCGGTAgcaaattcataaaatggggggtcgTA
ATTAAGGGATATCTGAgtgattttagtgattttttctaggaaaatgaagt
cattataaagtgattttggggtttaaaaaatcgataaaatggaaaattac
ccccccccccacctacagttaagcacagaagagtagcacagtaattttat
aattttaatgctgaatttcgaatttttcagaCGCACAAGAAAGGAATTTT
ACAATGGTTTGTTCATTGCTGAAGACAAGAAAGTTGGAAGTTTTATCAAT
GAAATATACAAAGGCAAATTTGGAAAGGTGAATCACTTTGTCATCACAAG
ATagtaaaactaaaaatatttgaGTTATTCTTTAACAAGATGTCTTTTAC
GTATATATGTTTTCGCGAGcctttaaaataaaatgaatctaGCTCCAAAA
CTGTCTTTTTTTAAGTCATAACAATTCAAAATACACATTCAAATAATGCA
CACAGCTAGCCAGCAACCATTTACCTTTTTCGACGATCAACTGATAAAAC
GTTCTTAACACGTTTAGGTGGAAGCAGATTACATTTGTGGTGGAAAATGG
AACGCTGCAAGAAACAACGCACGCAAATTTAAATCCCTTGACACAACTGG
GCTTGAAGTGATGTCATGCCGCCATCAGCTTGGGCAAAGAGCTCTTAATA
TGAAGCAAGGGGAATTATACGGATACCCATTATACCTGATAAAGGAGCAC
ATCAACACAAGAGATATCAAGTTCGTTTTTGCTGACGTGATGTGCAAGCT
ATCGAAGTTTATCCAACGCGTTGATGCCGAAACAGCCAAAGCTTTCAAAG
GAGCTTTGTCTGTGATGCACGCCAAAGGCCACGGAATAGACTGTCAAGTA
TTTATTCATTTAGATGATTTAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022183XLOC_022183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037408-exon-sc0001625-1491911889:77914..77928TCONS_00037408-exon-sc0001625-1491911889:77914..77928Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1510915933:77914..77928TCONS_00037408-exon-sc0001625-1510915933:77914..77928Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1575043694:77914..77928TCONS_00037408-exon-sc0001625-1575043694:77914..77928Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1491911889:78050..78148TCONS_00037408-exon-sc0001625-1491911889:78050..78148Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1510915933:78050..78148TCONS_00037408-exon-sc0001625-1510915933:78050..78148Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1575043694:78050..78148TCONS_00037408-exon-sc0001625-1575043694:78050..78148Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1491911889:78683..78927TCONS_00037408-exon-sc0001625-1491911889:78683..78927Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1510915933:78683..78927TCONS_00037408-exon-sc0001625-1510915933:78683..78927Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1575043694:78683..78927TCONS_00037408-exon-sc0001625-1575043694:78683..78927Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1491911889:79277..79455TCONS_00037408-exon-sc0001625-1491911889:79277..79455Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1510915933:79277..79455TCONS_00037408-exon-sc0001625-1510915933:79277..79455Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1575043694:79277..79455TCONS_00037408-exon-sc0001625-1575043694:79277..79455Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1491911889:79794..79890TCONS_00037408-exon-sc0001625-1491911889:79794..79890Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1510915933:79794..79890TCONS_00037408-exon-sc0001625-1510915933:79794..79890Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1575043694:79794..79890TCONS_00037408-exon-sc0001625-1575043694:79794..79890Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1491911889:80131..80487TCONS_00037408-exon-sc0001625-1491911889:80131..80487Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1510915933:80131..80487TCONS_00037408-exon-sc0001625-1510915933:80131..80487Clytia hemisphaericaexon
TCONS_00037408-exon-sc0001625-1575043694:80131..80487TCONS_00037408-exon-sc0001625-1575043694:80131..80487Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001625supercontigsc0001625:77914..80487 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0.218629	0	0	0	0	0	0	0	0	0	0	0	0.262987	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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