TCONS_00037400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037400
Unique NameTCONS_00037400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length274

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037400 ID=TCONS_00037400|Name=TCONS_00037400|organism=Clytia hemisphaerica|type=transcript|length=274bp
CAAGAGCTTTGAACAGAAAAGAAGTTTCCTTATAAATCcactaaattttt
atttttattttgtattccTTTTCCACGCAGCATCCGGAATTCAGTTTCCT
ATTGAAGGAGAGAGTGTGTCCACTGATTATCAAACTGTTCTCACCTAACA
TCAAGTACAAACAGGGTGGTCAGAACACGCCAACTATCATTGAGAAGCCT
GTGTTCTCAGTGTCAGTACGATTGCTTCGTGTGGTGTCTGTTCTCATCAA
ACAGTTCTATTCTTTACTGGTGAG
Run BLAST on NCBI

transcript from alignment at sc0001623:39908..40181

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037400 ID=TCONS_00037400|Name=TCONS_00037400|organism=Clytia hemisphaerica|type=transcript|length=274bp|location=Sequence derived from alignment at sc0001623:39908..40181 (Clytia hemisphaerica)
CTCACCAGTAAAGAATAGAACTGTTTGATGAGAACAGACACCACACGAAG
CAATCGTACTGACACTGAGAACACAGGCTTCTCAATGATAGTTGGCGTGT
TCTGACCACCCTGTTTGTACTTGATGTTAGGTGAGAACAGTTTGATAATC
AGTGGACACACTCTCTCCTTCAATAGGAAACTGAATTCCGGATGCTGCGT
GGAAAAggaatacaaaataaaaataaaaatttagtgGATTTATAAGGAAA
CTTCTTTTCTGTTCAAAGCTCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022177XLOC_022177Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037400-exon-sc0001623-1491911889:39908..40181TCONS_00037400-exon-sc0001623-1491911889:39908..40181Clytia hemisphaericaexon
TCONS_00037400-exon-sc0001623-1510915933:39908..40181TCONS_00037400-exon-sc0001623-1510915933:39908..40181Clytia hemisphaericaexon
TCONS_00037400-exon-sc0001623-1575043694:39908..40181TCONS_00037400-exon-sc0001623-1575043694:39908..40181Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001623supercontigsc0001623:39908..40181 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.21525	4.70306	0.606745	1.18721	35.4102	30.2658	29.6249	39.9892	10.8377	19.577	10.8583	14.6325	16.2509	25.168	4.56431	13.8847	14.482	10.3081	2.27859	9.5458	9.05917	12.1305	6.14423	8.9376	37.3974	31.3224	7.3479	5.48932	14.2747	10.9077
Blast
[Close]
BLAST of TCONS_00037400 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.443e-17
Identity = 49/67 (73.13%), Postives = 57/67 (85.07%), Query Frame = 3 
Query:   78 QHPEFSFLLKERVCPLIIKLFSPNIKYKQGG--QNTPTIIEKPVFXXXXXXXXXXXXXIKQFYSLLV 272
            QH EFSFLLKERVCPL+IKLFSPNIK++QG    ++P  +EKP F + +RLLRVVSVLIKQFYSLLV
Sbjct:  263 QHQEFSFLLKERVCPLVIKLFSPNIKFRQGSSTSSSPAPVEKPYFPICMRLLRVVSVLIKQFYSLLV 329
The following BLAST results are available for this feature:
BLAST of TCONS_00037400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MON21.443e-1773.13Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 ... [more]
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