TCONS_00037396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037396
Unique NameTCONS_00037396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length703

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037396 ID=TCONS_00037396|Name=TCONS_00037396|organism=Clytia hemisphaerica|type=transcript|length=703bp
ATGACGAATACATCGATGAAGATGGAATGTTAGATAACATACTGAGAAAC
GAGAGGCGAGCAAGGCAACAACGACGAGTTAACCAAGACATTTATCCGCT
GGGAGAAGAAACAAGAAcaatattgaaaatatatttagaaCAAAACGAGT
AGTACTTTTCATGTAGTGTTCAATGAGAGTGAAATGTTAAAATATTAACT
AAAAACCGTTAAAAACAGTATAATGtttcaacttttaaattttctagaaa
aaaaacataagacaagtgttaccaaaatattttcacttttgattttgacC
ACCAGGACCACCAGATAAAATGTTTCCTAACTGTAAGAAAAAATCTCTAT
cgcgttttttttcttctgcgTCATGTTTTTGTTGGTTTTCCACCAACTCT
CTCATGAATTTTGTGTAGTTTTGTTcggaagatttgaaaaaatcaatttg
ttcTCTCTGAACATCAAGTAGTTCTTCGtggaatgtttttttcttcttat
tctTTTTTGAATCATTTAAATCAGTCAATTTTCGTTTGTTCTTGTTTTCA
TTTCCGTCAGGTTTCTTGTTTTCGTCAGTACCCTCAAATTCTTCAAACGT
GTCATTCATACCCGTTCCGCGAGCCGTCTCTGTATCAATATCAGAATCTT
CTGATTCAATAAGCTCATCTTCTTGTTGGAGGATGGATTTGCCACATGTC
CAA
Run BLAST on NCBI

protein sequence of TCONS_00037396-protein

>TCONS_00037396-protein ID=TCONS_00037396-protein|Name=TCONS_00037396-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
WTCGKSILQQEDELIESEDSDIDTETARGTGMNDTFEEFEGTDENKKPDG
NENKNKRKLTDLNDSKKNKKKKTFHEELLDVQREQIDFFKSSEQNYTKFM
RELVENQQKHDAEEKKRDRDFFLQLGNILSGGPGGQNQK
Run BLAST on NCBI

transcript from alignment at sc0001623:10233..10935

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037396 ID=TCONS_00037396|Name=TCONS_00037396|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0001623:10233..10935 (Clytia hemisphaerica)
TTGGACATGTGGCAAATCCATCCTCCAACAAGAAGATGAGCTTATTGAAT
CAGAAGATTCTGATATTGATACAGAGACGGCTCGCGGAACGGGTATGAAT
GACACGTTTGAAGAATTTGAGGGTACTGACGAAAACAAGAAACCTGACGG
AAATGAAAACAAGAACAAACGAAAATTGACTGATTTAAATGATTCAAAAA
agaataagaagaaaaaaacattccaCGAAGAACTACTTGATGTTCAGAGA
gaacaaattgattttttcaaatcttccgAACAAAACTACACAAAATTCAT
GAGAGAGTTGGTGGAAAACCAACAAAAACATGAcgcagaagaaaaaaaac
gcgATAGAGATTTTTTCTTACAGTTAGGAAACATTTTATCTGGTGGTCCT
GGTGgtcaaaatcaaaagtgaaaatattttggtaacacttgtcttatgtt
ttttttctagaaaatttaaaagttgaaaCATTATACTGTTTTTAACGGTT
TTTAGTTAATATTTTAACATTTCACTCTCATTGAACACTACATGAAAAGT
ACTACTCGTTTTGttctaaatatattttcaatattgTTCTTGTTTCTTCT
CCCAGCGGATAAATGTCTTGGTTAACTCGTCGTTGTTGCCTTGCTCGCCT
CTCGTTTCTCAGTATGTTATCTAACATTCCATCTTCATCGATGTATTCGT
CAT

Coding sequence (CDS) from alignment at sc0001623:10233..10935

>TCONS_00037396 ID=TCONS_00037396|Name=TCONS_00037396|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0001623:10233..10935 (Clytia hemisphaerica)
TGGACATGTGGCAAATCCATCCTCCAACAAGAAGATGAGCTTATTGAATC
AGAAGATTCTGATATTGATACAGAGACGGCTCGCGGAACGGGTATGAATG
ACACGTTTGAAGAATTTGAGGGTACTGACGAAAACAAGAAACCTGACGGA
AATGAAAACAAGAACAAACGAAAATTGACTGATTTAAATGATTCAAAAAa
gaataagaagaaaaaaacattccaCGAAGAACTACTTGATGTTCAGAGAg
aacaaattgattttttcaaatcttccgAACAAAACTACACAAAATTCATG
AGAGAGTTGGTGGAAAACCAACAAAAACATGAcgcagaagaaaaaaaacg
cgATAGAGATTTTTTCTTACAGTTAGGAAACATTTTATCTGGTGGTCCTG
GTGgtcaaaatcaaaagtga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022173XLOC_022173Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037396-proteinTCONS_00037396-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037396-exon-sc0001623-1491911889:10233..10935TCONS_00037396-exon-sc0001623-1491911889:10233..10935Clytia hemisphaericaexon
TCONS_00037396-exon-sc0001623-1510915933:10233..10935TCONS_00037396-exon-sc0001623-1510915933:10233..10935Clytia hemisphaericaexon
TCONS_00037396-exon-sc0001623-1575043694:10233..10935TCONS_00037396-exon-sc0001623-1575043694:10233..10935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001623supercontigsc0001623:10233..10935 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272054	0.439142	0.196131	0	2.51412	1.52067	0.992872	0.816524	0.669752	0.20948	1.4469	0.800337	0.181843	0.484788	0.624176	0.875977	0.557108	0.272063	0	0	0.0864127	0	0.113	0.336555	0.52835	1.16402	0.266662	0.112972	0.854194	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top