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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037395 ID=TCONS_00037395|Name=TCONS_00037395|organism=Clytia hemisphaerica|type=transcript|length=3944bpRun BLAST on NCBI protein sequence of TCONS_00037395-protein >TCONS_00037395-protein ID=TCONS_00037395-protein|Name=TCONS_00037395-protein|organism=Clytia hemisphaerica|type=polypeptide|length=827bp GYLLSKYQNSKHFGTFVRPQDVGKRLNFFVGHPVHTIFYFRSFCQFYDMQRun BLAST on NCBI transcript from alignment at sc0001623:21108..37839- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00037395 ID=TCONS_00037395|Name=TCONS_00037395|organism=Clytia hemisphaerica|type=transcript|length=16732bp|location=Sequence derived from alignment at sc0001623:21108..37839- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001623:21108..37839- >TCONS_00037395 ID=TCONS_00037395|Name=TCONS_00037395|organism=Clytia hemisphaerica|type=CDS|length=34776bp|location=Sequence derived from alignment at sc0001623:21108..37839- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00037395 vs. Swiss-Prot (Human)
Match: MON2 (Protein MON2 homolog OS=Homo sapiens GN=MON2 PE=1 SV=3) HSP 1 Score: 649.818 bits (1675), Expect = 0.000e+0 Identity = 366/800 (45.75%), Postives = 505/800 (63.12%), Query Frame = 3
Query: 120 FRSFCQFYDMQEHSTKVFKEICEALHKFVNSMLEREMSQVYXXXXXXXXXXXXXXXXXXEKAPTQSG-------------FLYRGQWIPVPNVS-QTNIKPIYLEQLEHKNEGVNVSESYAMHMVFLCVVEICQALDVLILDRISKKKKKDIENGDYLVENVKHTDKTGLGSEAFKHNQPLDVQDEDMTK--VWNKMIDHXXXXXXXXXXXXXETCTDEVATDHVLKGLQTFASVCGQLDRTNDRDQFISCICKSALPVNY------------YANNLSVVQQKESLSKTMSSDS---TTSVDKKEDQMNGHSIVMTVKNIQCMRALLNLAHCHGGILGTAWYMTLVTLQHLTQILGLKLSSGGTNKTAKANEIPNLVISQSMMADIPVLSTMLSQLFESSKVLDDVSLHHLVDALCRLSTEDMEYA-TQNKEPCLFAVAKMLETGLVNIHRLRVLWRPLTNHLLEVCQQPHSRLREWAGDVLTTLIKRATFYDHKPPFSEDLPLQLLVMYPLQEMASIQFTDLRQQQFECVLNILQERATQLGTTWPVMLRIIGSATNQQNDVITRLAFQSLQLVVTDYLPIIPCWCLQVLVEVVGKFGLQPNEINISLTAIGLLWNLSDFLYQNRSNLKRDLEEYKKCQPDLVKKEETAPQSPIHNIELYPSLDSLVPPFDSAWMCLYGKLGELCVDPRPAVRKSAGQTLFSTISAHGGLLENQTWYMVLWKVLFPLLEKVRSTSSVAANCPPPSDNTVLPGNILIHHSRDTAEKQWAETCVLTLAGVARVFSTRSHILKKLDEYPRA 2423
RSFCQ YDM++HSTKVF++I AL F+ S+ + + + S AP SG F YRG WIP+ ++ Q + K YLE L+ K E + E YAM + F C++++ + + +I + + + + + + T++ L S + D D+++ VW +M++ W LL+ LSLLL+ TDE AT+++LK T A++CG+L RD FI+ ICK +LP +Y +N VQ + + + SS+S +V + ++++T KNIQCMR LLNLAHCHG +LGT+W + L TLQHL ILGLK SSGG K +A E P+ V++ ++M D+PV+S +LS+LFESS+ LDDVSLHHL++ALC LS E M+ A NKEP LFAVAK+LETGLVN+HR+ +LWRPLT HLLEVCQ P+SR+REW + LT+LIK ++H PP S++ LQLL++ PL+EM++I D+R +Q ECVL ILQ + LG WP++L ++G+ N Q + + R AFQ LQLVVTD+LP +PC CLQ++V+V G FGL E+NISLT+IGLLWN+SD+ +Q ++++L + + Q +++ P H PPFD W+CLY KLGELCVDPRPAVRKSAGQTLFSTI AHG LL++ TW+ V+WKVLF LL++VR +S+ A S GNILIHHSRDTAEKQWAET VLTLAGVAR+F+TR ++L+ L ++ RA
Sbjct: 369 LRSFCQSYDMKQHSTKVFRDIVNALGSFIQSLFLVPPT----GNPATSNQAGNNNLGGSVSAPANSGMVGIGGGVTLLPAFEYRGTWIPILTITVQGSAKATYLEMLD-KVEPPTIPEGYAMSVAFHCLLDLVRGITSMIEGELGELETECQTTTEEGSSPTQSTEQQDLQSTS-------DQMDKEIVSRAVWEEMVNACWCGLLAALSLLLDASTDEAATENILKAELTMAALCGRLGLVTSRDAFITAICKGSLPPHYALTVLNTTTAATLSNKSYSVQGQSVMMISPSSESHQQVVAVGQPLAVQPQGTVMLTSKNIQCMRTLLNLAHCHGAVLGTSWQLVLATLQHLVWILGLKPSSGGALKPGRAVEGPSTVLTTAVMTDLPVISNILSRLFESSQYLDDVSLHHLINALCSLSLEAMDMAYGNNKEPSLFAVAKLLETGLVNMHRIEILWRPLTGHLLEVCQHPNSRMREWGAEALTSLIKAGLTFNHDPPLSQNQRLQLLLLNPLKEMSNINHPDIRLKQLECVLQILQSQGDSLGPGWPLVLGVMGAIRNDQGESLIRTAFQCLQLVVTDFLPTMPCTCLQIVVDVAGSFGLHNQELNISLTSIGLLWNISDYFFQRGETIEKELNKEEAAQQKQAEEKGVVLNRPFHP----------APPFDCLWLCLYAKLGELCVDPRPAVRKSAGQTLFSTIGAHGTLLQHSTWHTVIWKVLFHLLDRVRESSTTADKEKIESGG----GNILIHHSRDTAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRA 1142 HSP 2 Score: 329.717 bits (844), Expect = 1.771e-92 Identity = 201/505 (39.80%), Postives = 290/505 (57.43%), Query Frame = 1
Query: 2389 TS*RSWMNIRELTLAGVARVFSTRSHILKKLDEYPRAWALLLEIIESNALSKNSEVALNSLKSFQEIVDDLSANNKAPKSKDSTSDA----------SAIS--FVAD-----------------ITDT--ELDLWANAWRIWQNIGTNSMENEHFLCTTKDANGKTETRTIYPSQPYLTALINIFPPLYSRIFTRFGIGDLQRFCKILTRSISMPLHSDTSPYLLPTFHHETVLSPLQQSVLNSIKALQQPIPMLSGRNILDHNSQQPMYPTLFSMLLSFVEFACCPPKVA---------STPKETESYAPRGRAGEWVVMNYVPLAEHAMKMIQDLYKISHARENVVELKVLENIIKTIHLPLKLKYACPSQNTWKLAVDLLLCVLHDGLKVHIQQ-QGDQFTSTWMALATTLEDFLFSKSPPPDTQTLEQHQADEQIDVKILKLIRQEILPNSASLPQEFVDTLMKLLNRGSIHTTSTTMFDRFRESSNTLEKGYRFSTKCDE 3780
T+ + W LTLAGVAR+F+TR ++L+ L ++ RAW +LL+ I+S ALSKN+EV+L +LKSFQEI+ +S + K + S +S FV +TD +L+LW AW W IG+ S + + T PSQP+LTALI IFP LY I T F + DLQ+ IL +IS+P+ SD SP++LP++ E VL+ LQ++VL ++ LQ+ I + + Q MYP +F LL+FVEF+C PP+ + + + +AP EWV +NYVP AE +++++ DLY+ + + VV KVL+NIIKT+ +PL LKY+CPS++TWKLAV LL VL GL V Q +F S W LA T EDFLF+KS PPD ++++ Q +E IDV++++LI EILP + +P+EFV +M +LN+GSIH+ S++ F E+ + FS C E
Sbjct: 1106 TAEKQWAETWVLTLAGVARIFNTRRYLLQPLGDFSRAWDVLLDHIQSAALSKNNEVSLAALKSFQEILQIVSPVRDSDKPETPPVVNVPVPVLIGPISGMSRPFVRTDSIGEKLGRYSSSEPPIVTDELEDLNLWWAAWNTWYRIGSESTKPPITF----------DKLTFIPSQPFLTALIQIFPALYQHIKTGFNMDDLQKLGVILHSAISVPISSDASPFILPSYT-EAVLTSLQEAVLTALDVLQKAI-------CVGPENMQIMYPAIFDQLLAFVEFSCKPPQYGQLETKHIANAKYNQIQLFAP----AEWVALNYVPFAERSLEVVVDLYQKTACHKAVVNEKVLQNIIKTLRVPLSLKYSCPSESTWKLAVSSLLRVLSIGLPVARQHASSGKFDSMWPELANTFEDFLFTKSIPPDNLSIQEFQRNENIDVEVVQLISNEILPYANFIPKEFVGQIMTMLNKGSIHSQSSS----FTEAEIDIRLREEFSKMCFE 1584 The following BLAST results are available for this feature:
BLAST of TCONS_00037395 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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