TCONS_00037391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037391
Unique NameTCONS_00037391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037391 ID=TCONS_00037391|Name=TCONS_00037391|organism=Clytia hemisphaerica|type=transcript|length=323bp
CAAACACTTATTTGAGATTGAACTGTGTAAATAAGAATTGATTTAAATAG
ATCTTAAGCCAAAGCCATAGGATGAAGAGTTTATAACCTCACCATTAtaa
caaaacttttttcttcagtacTGCGTACCAGGAATCTTGGGTATCATTGT
TGGCTGCACAAGAAATGTCTGTGCGATGACATTTTACTTGATCATGAACT
TGATCTGCATGGTATCCTCAGTGATAGTGACCGCCTTCTGTGGTATCATC
CTCCTTGCTTGGGCCATCTTGGAAACACTCAACAACGAAGGGAGATGCGA
CAACAGCCTCTTCATCAAACAAT
Run BLAST on NCBI

transcript from alignment at sc0001622:1..10552-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037391 ID=TCONS_00037391|Name=TCONS_00037391|organism=Clytia hemisphaerica|type=transcript|length=10552bp|location=Sequence derived from alignment at sc0001622:1..10552- (Clytia hemisphaerica)
CAAACACTTATTTGAGATTGAACTGTGTAAATAAGAATTGATTTAAATAG
ATCTTAAGCCAAAGCCATAGGATGAAGAGTTTATAACCTCACCATTATAA
CAAAACTTTTTTCTTCAGTACTGCGTACCAGGAATCTTGGGTATCATTGT
TGGCTGCACAAGAAATGTCTGTGCGGTAAGTAACCATCTTCGTTTTTATA
AAAAGTTTTATTTATTGAATTGTTGAAAGTGACATGATAGCCGGTATAAA
TTGGATTTAATTTTTAGTCTGATTTTGAAGCTATTCGAAAGGGGGTTAAA
AGTAGGAGTGCAAAAAATTACCCATACCTTTTAGCTGATTTGAATTGAGC
ACACAAAAAAATTCATTTTTTAAAATTTAATATATTATATTATAACTCAA
AAAATATTTCAAAATTATTCATACAAAAGTGCACTGTGTGTAGTGCATAG
CAGCGAAGACAAAGATATGAATAATTGATCCCAAAAGCCTCATGAACTTC
TAAAGAAGACTTTCATGCACTTGTTTGCGCAGAATTGAAGATGTAAAATA
AGTGACAGATTAGCATACTTTCAATACATAAAAAGCTCCCTGGTGTTTTT
GCTGCTCAAAGAAATCGAGAATGTCTCATTGATGAATTGATTCTCTGCTA
TTGACGTAATACCAGGCTTTGGAGTAGGTGTCAAGGATTTTTGAGAGCTG
TGAAAACAAAGAAATGATATGATTCCACTGATGTATCAGTTGTGAATTTT
TCTCAGACGAAACCTCGTTTGTGATATAAATACAATAGATAAAATGAATG
AAATTGTATAATATCCATGAAGCTAAGGTGAAGAGCTGGATATTGATAAA
TGGGTTTTTCAACAGATCAGATATAACTCCATAGATTACTTACGTTTGGT
AGGAACTGCACTGGATGTGCTTTTAAGCGACCTTTGTCAATGTCTTGTAA
AACTTTACTTTCAATTTCTTGACCATTACCAGTTCTTGAAAAGATGGTAT
TTTGTAAGAGAATCCAATGGTACAAAATTTTTGTATTCCATTTCGTGGAG
AGAGCCTGAAAAGGAGAACATTCTTTTGTAGAAATACTTTTTCTGTTTTT
TTACTCTTTTGTAGTTTCAATCGGTTTATTTTATCTAAAAAACGGTCAAT
TAGCGTTTATTATTTATCTCAAAGACTCAAAGCTTTTCGATCGCTTGTCA
TCTTTTAGTAGAATTCACTACATAGTTATTGAATGGTAGAACTTGCCAGA
TCTTGAAAAATGCAAGCCATAAAATCCTTTGTCGCTTACAATTATTGTCC
TGGTTGTAACAAAAGCAGGACGATGATACAGGTGTATCTTCCATGCATAC
AAGCCACTCTTTACATATTTATCATGCATTTGGAACTAGAGATGGATTTA
CATCGAGAAGTAATGTATTATTCAAAACATCCAAAGTAACAAAAGCTGTT
TTAAACAAGGAAAAAAGGCTCGACGAAACCGCAGTATCAACCAATATAAT
AAACCATTGTATTTCTTACGTAAAAATGAACGTCGTGAAAATAAATGGTC
GCATCAGTTGTCCACATAACCAGTGTACAAGTATCGAGATAATAGTGCAT
AGGATTGCAAATAAACTTGAAGTCTATGAATTTCCCCTCTGTGCATTTAG
GTGGAATTTTCCTATAAAATGTATAATTCTTCAGTGAATTTCTTAGATTC
AGAAAGTATCTACATACAAACACTATCTTCCTGCAGACTATAGGCATCCC
CGAAATAGTAATTACTGCAAAAAAGAGTAAATTTTGAGTGTCAATTAATC
TGTTTTATCCGTGAAGTAAGTAAATAATTGGACGGAATCAAAAATACCGT
TTCTGTTTCAAAGTATTGGTAGAAGTATTGGTAGAGTACAAAGATGAGAA
TGGTAGTCAACTTTTGAACCCAAACAATCCCATGTATCTATTTACTTACT
CTTCCTCATCTCTTTCAATCATTCGCGTTCCAAAGACAATCGCAACCATA
ATAAACACACCATATGCAATAAACAAACATAATATTCCAAATAACATCTC
CAAACAGGATGGTAATCTGAAAGTTTAGAATTAACATTTCATTTAGACGT
GATCTTTCAATTTTAGTTGCAAAAGAAGAAAGTGATTTTCAGGATTCTCG
TTACTGTATCGTGTTCGGGTTGAACTAAGTTAAAATGGTTATTTGATTGT
ATGTTACCAAGGTAACAAGAATCTCCAACCTAAGTTACTTTGCTTCTCTG
TAAACATGTAATGTTAATCTTACGTTCTATTTTTGAAGAATAAATGATCC
AATTTGTTCCATATAATCTCCATCCTGGTTGGTTGAGGTGCACTGTACAG
CCTGTAAAGTAGTGTCAATCTAATATTAATGGCACTGTAAACATATCTTT
TATATCATTTATAAAATACATGAACTAAAATCATCTGAAATATCATCAAA
AATAACATGAAATCATCAAAATAAAAAGAGTAATGGAAGCAACTCAGGAA
GCGAGTGTTTAAAAATGACATTTAAAGTCATTCGGCTTACCCAGCATTCT
TCAAGATGCTTTTAACATCAGTCCAAATTGATCCCCAACTACTCTTTGGT
TTAGGAGCACGCCATCTGAAAAATATCAGGAAAGGAAATTTTGTTGAGGA
ATAGTATTCAAAGTTCTTCTGTCTCAATAAATGGTTAAAAAGAGATTTTC
CTGTCTTAAATTAAGCAAGATTTAGCTAAATTGAAAGAATCTGAGCTAAT
TTTTTGTGTAAAGACTATTTTCTGTCTGAGAGAAAACTTCTCTTTTACGC
TGAAAGAACTGATATCTGACTGAAGTATTAAATTTAATGAAATAAGACAA
TCTAGCTTAGTTTACCAAAAGATTGAATTGAAAACCCAATGTTTTCTTCA
AAGTGGAGTATTCTAAACGAGATATTCACTTAAAAGAAGATGCGACTGAC
CTTTTGTACTCGTGGAAGGCGTGGTGCAAAGTAAAACAAGAGGCCACAAT
AAAAACGGCATAAGCCAAAACATAAAAGAATAGTAATTTCTTCGAGATCG
GTCTTGATCGGCTGTAAAAAGAAAAAAATATAATAATCAGTCAGTGAAGA
AGAATTATGTTCTCCGGAGTATTAAAAGAATGCAAAATAGATGATCGAAA
TATGCTACGGATCCGAAAGTTAGCCCATGCTACATTTTCTTTGGGTGAAG
CTTTCTTACGAACCTAAAAGTCGCCTGTAACTAGCTCTGATAAGCTTATT
TATTGCGAAAAAGAAAAAACCAAACAAATGAAGAATGAAAACTTTAGTAT
AACGGAGGATTCATATTTCAACAAACATCAATATAAAATACAAGATGAGG
TTTAAGAAAGATCGAATCACTTACTTATCAACTATAACAATCCCATCACA
ATCGAGCTCATTCTTTTTATTTGCAATAATTTCTGTATGATGAATTCGTT
TGATACTTGGTTCACTTAGAAAACCTTCAAACACCTGAAAAGAAAAACAA
GGTTGAACATTCTTTAATTTGAGTGAAGCTGAGGATCACGTCACGGAATC
TTTCAAATTATTCAAACGACCTAAAAATTAAAATTTTGAAAACACGTAAA
AAGTGCACCAAAGAACACGTCAGCCAAAAAATGGCAAATCACACAGACAT
ACAAACAGTCTAAGATCCTAGCCCATCTGAAGTTGAGAATTGCATCATGA
TCATGAAAAATCATCCTAAAATATCATATTATAACGGTGTTCATTGGTTA
ACCAAACCTTAACCCAATGTAAATTTGAAATATAATGATTTTTTAAAAAT
CTGACTGAAGACTGCCTGAGACGGTACGAAACTCCGAGAATCGGAGAATA
AATTTGTCTCTATAATTCTTGACTGATAAAATATAATGCACATATATGAA
TACGCCGAAAATTATTGCCATAGTAACCGCAAAAAAAAAAAAANNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNCTATGTGGAATCGCATTCGCTGAAGT
TGTAACTTTCATAGAAGAAATTTGCCAAGCTTGGTGTAACTGTTGAAACA
AGGGAGCACAGCACTCGCTTCAAAGAAAGGCTTCTTGCTCAATTTGAAGG
CTGGACAGCTTATAATAGCAGGAGTCATTATAGCGAAGATCAAAAATGGC
TTGACAATCTTAGCAAATCATCATGGGCTGTTTATCATTCAGTAAATCAA
GAGCAAAGATACGCCCGCTATGCTTCCGATTCTACGAGACGACTCCAAGT
CACCAGCTACAATCAAGTATTTGCTGAACAAGCAGCAGTGATTGGTCTTG
ACCAGCCTTTGTACGCGATCGAAAAGAAAATCCAGTGGCATCATCCTTCG
CTAATGGTGAAAAGAAACTGGTATTGATGCTTGGGGCGTTACACATCGAG
ATGGTCATGATGGGATGTATAGGTGATTTCTAGAGAATAGTGGCTGGACA
GAAGCTCTTTTAAGTAGTGGAGTGACATCATCAGGAAATGAAGCAATGTT
ATCAGGTCATGATGTCGCTAAAACAAAGTATTGTCACCAAGTAACAGGAA
TGTCATTAAATCATCTGATGAAAGCGACGTGTCCTTACAAGGCCGAAAGA
AGATTGTTGTTCGTGGATATAGAGATGTTGCAGTCTCCGTGTTCGCCCGC
TTGAAAGAACAGTTGGAAGAGTTATGGGTCGATTTTGGAACGGGGAAGCA
CCGGCATTTTATTCCAGCTCACAAAATATTCTCTAAAATTGGTCAGTTGA
AAGCCTTAGCACTTCCATTTTTCCATGCCTTTACAGGCTGCGATCAAGTA
TCTTTTTTCTCACGTGTTTCAAAGGATTCAGCATGGAAAGTTTGGGAGTC
GTTCGAAGAAATTACTTCTGTTTTCGAAAANNNNNNNNNNNNNNNNNNNN
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NNNNTTTGGGCTCCCGGACTGAAATCGTTTATTTAGGTCTAAAGTAGGTC
TGTGCAAAATTTCATGCTTTTTGCAAAAAGTGCACAATCATTTCACCATT
GGCCCACACTATTACCATCTTCGTCTTATTCACCATTATTATCGACTTTT
TTTAAATAATCACATATCCAAGAAATTTGTTTTTTGAAAAGCGATGAAAA
CTCTAATACAAACTAACAAAAAACCACATTGTCATTTTTGAATTTTCAAT
GTATACGGTGAAAGCGAAACAAATTAACGTCAAATATTTTTGTTCGTTTA
AATTGACGTCAAAATGATTTCGTGCTATAACGCGTAAACAAGCGATTGAC
TGATACTCGCGGACAAATTTCATGAATTACGTAAAGAACAACGTTTGTCT
ACCCTGTTTTCAAAATATTGTTATTGAGTTTATAAGAGTTTGACTCGAAA
ATGAAATAAAAGAAAGTCAATGTCACTGAACTTTACTAGCTAGCGTCAAC
ACCTAATGGACATCAAATACCTATTTCAAGTAAAACTTGAAGATTAAAGG
GCCTTTCACCGGGGGTAATAGGGTTGTGAGCTGACGGGGTTGTACCGCCC
GACTTTCGACCCTCGCACCCTTAGCGGGACTAAAAAAGAGGAAAATTTGG
AAAATTTTGTTAACTTGACCAAATTTTGGTAGGCTAGTCTTAACAAATGA
CAAATTGGTAGGCTAGTCTTAACAAATGAAAATTGTAAGGTGTCAAAAAT
CTTTCCCGAAGATTCTTTATTTTCAGTATAATAAGACGTAGTGGTGTGGT
GGTCATCGCTCTTAACTCCCGTCTGGGAGGTCCGAGTTCGATTCACTGTA
GTACTACGGTTCACTTGGCAAGTGAACATACCTTCGCCCGGGTCAACCCA
TACCATGTGATGGGAATTGGGTACCACTACTCTGATACAAGAGTGTGGGT
GATATGCGACGAGCTATATACTCTCCCGCGCAGTTCGAGTCTCACCACTA
TGCATCATGGTATCTGTGTCTCGCGTGCACAGAACCAGCGGTGTCTGGAC
AGTGCTAAGCGTTCCTACTTGAAAAAGGAGGAATTCCTATTTCGTAAGGA
GTAGGACCCATTCCACAGTGGGGAGGGCTCATATCATCATCATCAATATA
ATATCCCACGTGTAGCCCAAAATTCCATACATTCAAATACAATTTTAGAT
CAGTTCTAGTTTAACCTTTCCCTCGTAAAAATGACTTTTTTCATTTATTT
CCAGATGACATTTTACTTGATCATGAACTTGATCTGCATGGTATCCTCAG
TGATAGTGACCGCCTTCTGTGGTATCATCCTCCTTGCTTGGGCCATCTTG
GAAACACTCAACAACGAAGGGAGATGCGACAACAGCCTCTTCATCAAACA
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022168XLOC_022168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037391-exon-sc0001622-1575043694:10378..10552TCONS_00037391-exon-sc0001622-1575043694:10378..10552Clytia hemisphaericaexon
TCONS_00037391-exon-sc0001622-1575043694:1..148TCONS_00037391-exon-sc0001622-1575043694:1..148Clytia hemisphaericaexon
TCONS_00037391-exon-sc0001622-1510915933:10378..10552TCONS_00037391-exon-sc0001622-1510915933:10378..10552Clytia hemisphaericaexon
TCONS_00037391-exon-sc0001622-1510915933:1..148TCONS_00037391-exon-sc0001622-1510915933:1..148Clytia hemisphaericaexon
TCONS_00037391-exon-sc0001622-1491911889:10378..10552TCONS_00037391-exon-sc0001622-1491911889:10378..10552Clytia hemisphaericaexon
TCONS_00037391-exon-sc0001622-1491911889:1..148TCONS_00037391-exon-sc0001622-1491911889:1..148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001622supercontigsc0001622:1..10552 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.1815	10.6208	8.45609	6.89414	105.332	94.1775	78.8147	80.5272	58.739	79.254	71.8815	61.3448	80.7136	81.8875	104.606	124.395	82.4621	82.845	57.2274	66.4612	38.8121	42.265	48.8811	43.7912	46.7744	53.0759	32.8554	44.6271	52.8445	43.6352
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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