TCONS_00037385 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037385
Unique NameTCONS_00037385
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037385 ID=TCONS_00037385|Name=TCONS_00037385|organism=Clytia hemisphaerica|type=transcript|length=688bp
CTTCAGGGTTGGTTTTACCAGTAAAgttttttcgacaattttcatGATAC
TCGGCGTTCCCTTGTATTAGATCAACGCAGGGGACGATTCGCCGTCTAAC
TTATTCTGTCCATTCGTCATCACGTTTATCGCGAATTTCAAGCAACGTAT
CACGTAATGTAGATAGACTTCTTTAAAAGTGTGCAGCCTGTTAGGATGTC
TCTCATCAATGTCACATATCTCTGAACAAAAAATGCATtgctttttgaaa
tcaaaagcaCTCATGGATTGTCTCTTTCTAGGTACTTTATTTCTAACAGG
GTCTTTTTCATCTGCAATTTCCTTCTTCCGTTTTCGTATACTGTTGCTGA
GATTCTTTTGGCAGCTCAGGTGAATTTGGACAGGTGCTTGTTTTGCTAAC
GTTGATTTTATTCGATCGTCATTTAGAACTTTAGCGTATTCCTCGAGTTT
CCCAATTCCCGATACGCAAACACGAAGTGCCTCCTCGGTTTTTTGTTGGC
AAACGATACAAGCCTCGTGTTCTCCATTCATCTCCATCTTAAAAATTGTC
GGAGCATTCATAAAATGCCAAAGGCAATGTTGGGTCTGTGAAGACGAAGG
ATGATTTTTTACGAAACAGTAGGGATGTGTTAAGAATAAAGATTTCTTTT
GGATTATCATTTCAATGATTCTTTTGATCAACGCCTCA
Run BLAST on NCBI

protein sequence of TCONS_00037385-protein

>TCONS_00037385-protein ID=TCONS_00037385-protein|Name=TCONS_00037385-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
EALIKRIIEMIIQKKSLFLTHPYCFVKNHPSSSQTQHCLWHFMNAPTIFK
MEMNGEHEACIVCQQKTEEALRVCVSGIGKLEEYAKVLNDDRIKSTLAKQ
APVQIHLSCQKNLSNSIRKRKKEIADEKDPVRNKVPRKRQSMSAFDFKKQ
CIFCSEICDIDERHPNRLHTFKEVYLHYVIRCLKFAINVMTNGQNKLDGE
SSPALI
Run BLAST on NCBI

transcript from alignment at sc0001620:21922..22609

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037385 ID=TCONS_00037385|Name=TCONS_00037385|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at sc0001620:21922..22609 (Clytia hemisphaerica)
TGAGGCGTTGATCAAAAGAATCATTGAAATGATAATCCAAAAGAAATCTT
TATTCTTAACACATCCCTACTGTTTCGTAAAAAATCATCCTTCGTCTTCA
CAGACCCAACATTGCCTTTGGCATTTTATGAATGCTCCGACAATTTTTAA
GATGGAGATGAATGGAGAACACGAGGCTTGTATCGTTTGCCAACAAAAAA
CCGAGGAGGCACTTCGTGTTTGCGTATCGGGAATTGGGAAACTCGAGGAA
TACGCTAAAGTTCTAAATGACGATCGAATAAAATCAACGTTAGCAAAACA
AGCACCTGTCCAAATTCACCTGAGCTGCCAAAAGAATCTCAGCAACAGTA
TACGAAAACGGAAGAAGGAAATTGCAGATGAAAAAGACCCTGTTAGAAAT
AAAGTACCTAGAAAGAGACAATCCATGAGtgcttttgatttcaaaaagca
ATGCATTTTTTGTTCAGAGATATGTGACATTGATGAGAGACATCCTAACA
GGCTGCACACTTTTAAAGAAGTCTATCTACATTACGTGATACGTTGCTTG
AAATTCGCGATAAACGTGATGACGAATGGACAGAATAAGTTAGACGGCGA
ATCGTCCCCTGCGTTGATCTAATACAAGGGAACGCCGAGTATCatgaaaa
ttgtcgaaaaaacTTTACTGGTAAAACCAACCCTGAAG

Coding sequence (CDS) from alignment at sc0001620:21922..22609

>TCONS_00037385 ID=TCONS_00037385|Name=TCONS_00037385|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0001620:21922..22609 (Clytia hemisphaerica)
GAGGCGTTGATCAAAAGAATCATTGAAATGATAATCCAAAAGAAATCTTT
ATTCTTAACACATCCCTACTGTTTCGTAAAAAATCATCCTTCGTCTTCAC
AGACCCAACATTGCCTTTGGCATTTTATGAATGCTCCGACAATTTTTAAG
ATGGAGATGAATGGAGAACACGAGGCTTGTATCGTTTGCCAACAAAAAAC
CGAGGAGGCACTTCGTGTTTGCGTATCGGGAATTGGGAAACTCGAGGAAT
ACGCTAAAGTTCTAAATGACGATCGAATAAAATCAACGTTAGCAAAACAA
GCACCTGTCCAAATTCACCTGAGCTGCCAAAAGAATCTCAGCAACAGTAT
ACGAAAACGGAAGAAGGAAATTGCAGATGAAAAAGACCCTGTTAGAAATA
AAGTACCTAGAAAGAGACAATCCATGAGtgcttttgatttcaaaaagcaA
TGCATTTTTTGTTCAGAGATATGTGACATTGATGAGAGACATCCTAACAG
GCTGCACACTTTTAAAGAAGTCTATCTACATTACGTGATACGTTGCTTGA
AATTCGCGATAAACGTGATGACGAATGGACAGAATAAGTTAGACGGCGAA
TCGTCCCCTGCGTTGATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022162XLOC_022162Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037385-proteinTCONS_00037385-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037385-exon-sc0001620-1491911889:21922..22609TCONS_00037385-exon-sc0001620-1491911889:21922..22609Clytia hemisphaericaexon
TCONS_00037385-exon-sc0001620-1510915933:21922..22609TCONS_00037385-exon-sc0001620-1510915933:21922..22609Clytia hemisphaericaexon
TCONS_00037385-exon-sc0001620-1575043694:21922..22609TCONS_00037385-exon-sc0001620-1575043694:21922..22609Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001620supercontigsc0001620:21922..22609 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33319	1.01117	0.419308	0.410228	0.79906	0.236785	1.23791	2.58528	1.37311	1.46889	1.87598	1.18387	1.47777	1.94393	1.55612	0.767276	1.16763	0.740864	0.787341	1.5654	1.79029	1.25746	0.59446	0.84928	1.35187	2.98079	3.35147	4.87742	1.64416	1.67513
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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