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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037382 ID=TCONS_00037382|Name=TCONS_00037382|organism=Clytia hemisphaerica|type=transcript|length=1235bp
tgcttccaaAACTTGTAAATGAAAAACGGGATGCCAACATGATGATCGAC
AAGACATATCTTCGATTTGAACCTAATATCATTTTCAAGATGGGAAACAT
TGGGGCTTGCGGTAACCGAGTCCGAGCAAGTGGAGTTGATTACATCAATC
ATCCACATCACCTATCGCTCACGCGATATTGTACAATATATTGACAATAG
ACATTAATGCTCACCCAACCTCTGACTGGATGCCAAGAGTTTCCGAAACG
TATTTCGTTCGAGATAGCGCGGTACAACTATCAATAGATTTGAAATTGCG
AGCGAGAAAGTAATATTAAATCCTTCTTACTCTTTACCTTCAATGCCTCc
gaaaacgaacaaaaaatgacatttcTACTCCCGAATTCCATTTCACACAG
ACCACCGACTTATCAAAGCAACCCTATGTACTCCCACAACCAGAATTGCT
CGAAGAAGATACAACAAAACACCAAACGAACCGAAACGTCATGTTAAGTC
TCTACCAATACCTATAGTTATATTAAAACATATAGAAAAACATTGTGTTG
AGAATTTGAATCGGAAGCTTGAAGCAAATCGTCCGTTCGATGAAGACATA
AATGTGTTTTCACAGAATCTTTTAAAAACTGTTGAGGAAGCTGTAAACga
ggtagactggagtcgtttacaatgcgtgtaatacagtagtatagacgcta
tatgataatacgattattgttacgggattaaGTTCATCCGATCTCGCTGG
ACCAGACCATTGCATTGTCGTTAGCAAATGCAAATTGAGCCTTCACTCTA
CCAAGAAGAAATCTTGAATATACTAGAAAATCCCGCCATTGCCACAGCTg
ttgaaaatgaaattcaaaccaaatggaCTGAATGTACCACAAAAGATTAT
AAGCACTTCTCAGAAATTGGTATGGCTGCTTATACGAACCACCTACCAGT
CAAGAAAAAGACCAACGACAGTGAACCCATATCAATAACAAACGCACGCA
GACAGGTCTTACAGTCCAAAATTACCGACCTTCAGAGGAACCTGACCAAT
CTGAAAAACGTTTATGTCAGAGAAGAAGAAAGAAGGATAACTCATATACT
CAACCAGGCAAACAAATCAGAATCTACTGATGGTTTAAGAAAATGCTTGG
AAAATTGTCAAGGAGTTAAGCGGGAAGAAAAAAGCAGCATCTGTCTCTAT
CAAAAGTGACGACCCAAAAAAGTCATGGAAAGATC Run BLAST on NCBI protein sequence of TCONS_00037382-protein >TCONS_00037382-protein ID=TCONS_00037382-protein|Name=TCONS_00037382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MQIEPSLYQEEILNILENPAIATAVENEIQTKWTECTTKDYKHFSEIGMA
AYTNHLPVKKKTNDSEPISITNARRQVLQSKITDLQRNLTNLKNVYVREE
ERRITHILNQANKSESTDGLRKCLENCQGVKREEKSSICLYQK Run BLAST on NCBI transcript from alignment at sc0001620:2199..3433 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037382 ID=TCONS_00037382|Name=TCONS_00037382|organism=Clytia hemisphaerica|type=transcript|length=1235bp|location=Sequence derived from alignment at sc0001620:2199..3433 (Clytia hemisphaerica)
GATCTTTCCATGACTTTTTTGGGTCGTCACTTTTGATAGAGACAGATGCT
GCTTTTTTCTTCCCGCTTAACTCCTTGACAATTTTCCAAGCATTTTCTTA
AACCATCAGTAGATTCTGATTTGTTTGCCTGGTTGAGTATATGAGTTATC
CTTCTTTCTTCTTCTCTGACATAAACGTTTTTCAGATTGGTCAGGTTCCT
CTGAAGGTCGGTAATTTTGGACTGTAAGACCTGTCTGCGTGCGTTTGTTA
TTGATATGGGTTCACTGTCGTTGGTCTTTTTCTTGACTGGTAGGTGGTTC
GTATAAGCAGCCATACCAATTTCTGAGAAGTGCTTATAATCTTTTGTGGT
ACATTCAGtccatttggtttgaatttcattttcaacAGCTGTGGCAATGG
CGGGATTTTCTAGTATATTCAAGATTTCTTCTTGGTAGAGTGAAGGCTCA
ATTTGCATTTGCTAACGACAATGCAATGGTCTGGTCCAGCGAGATCGGAT
GAACttaatcccgtaacaataatcgtattatcatatagcgtctatactac
tgtattacacgcattgtaaacgactccagtctacctcGTTTACAGCTTCC
TCAACAGTTTTTAAAAGATTCTGTGAAAACACATTTATGTCTTCATCGAA
CGGACGATTTGCTTCAAGCTTCCGATTCAAATTCTCAACACAATGTTTTT
CTATATGTTTTAATATAACTATAGGTATTGGTAGAGACTTAACATGACGT
TTCGGTTCGTTTGGTGTTTTGTTGTATCTTCTTCGAGCAATTCTGGTTGT
GGGAGTACATAGGGTTGCTTTGATAAGTCGGTGGTCTGTGTGAAATGGAA
TTCGGGAGTAgaaatgtcattttttgttcgttttcgGAGGCATTGAAGGT
AAAGAGTAAGAAGGATTTAATATTACTTTCTCGCTCGCAATTTCAAATCT
ATTGATAGTTGTACCGCGCTATCTCGAACGAAATACGTTTCGGAAACTCT
TGGCATCCAGTCAGAGGTTGGGTGAGCATTAATGTCTATTGTCAATATAT
TGTACAATATCGCGTGAGCGATAGGTGATGTGGATGATTGATGTAATCAA
CTCCACTTGCTCGGACTCGGTTACCGCAAGCCCCAATGTTTCCCATCTTG
AAAATGATATTAGGTTCAAATCGAAGATATGTCTTGTCGATCATCATGTT
GGCATCCCGTTTTTCATTTACAAGTTttggaagca Coding sequence (CDS) from alignment at sc0001620:2199..3433 >TCONS_00037382 ID=TCONS_00037382|Name=TCONS_00037382|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at sc0001620:2199..3433 (Clytia hemisphaerica)
TCACTTTTGATAGAGACAGATGCTGCTTTTTTCTTCCCGCTTAACTCCTT
GACAATTTTCCAAGCATTTTCTTAAACCATCAGTAGATTCTGATTTGTTT
GCCTGGTTGAGTATATGAGTTATCCTTCTTTCTTCTTCTCTGACATAAAC
GTTTTTCAGATTGGTCAGGTTCCTCTGAAGGTCGGTAATTTTGGACTGTA
AGACCTGTCTGCGTGCGTTTGTTATTGATATGGGTTCACTGTCGTTGGTC
TTTTTCTTGACTGGTAGGTGGTTCGTATAAGCAGCCATACCAATTTCTGA
GAAGTGCTTATAATCTTTTGTGGTACATTCAGtccatttggtttgaattt
cattttcaacAGCTGTGGCAATGGCGGGATTTTCTAGTATATTCAAGATT
TCTTCTTGGTAGAGTGAAGGCTCAATTTGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037382-exon-sc0001620-1491911889:2199..3433 | TCONS_00037382-exon-sc0001620-1491911889:2199..3433 | Clytia hemisphaerica | exon |
| TCONS_00037382-exon-sc0001620-1510915933:2199..3433 | TCONS_00037382-exon-sc0001620-1510915933:2199..3433 | Clytia hemisphaerica | exon |
| TCONS_00037382-exon-sc0001620-1575043694:2199..3433 | TCONS_00037382-exon-sc0001620-1575043694:2199..3433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001620 | supercontig | sc0001620:2199..3433 . |
Blast
The following BLAST results are available for this feature:
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