TCONS_00037381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037381
Unique NameTCONS_00037381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length341

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037381 ID=TCONS_00037381|Name=TCONS_00037381|organism=Clytia hemisphaerica|type=transcript|length=341bp
gcCCACCTCATCGAAATGGTTGGTTAGTAGGAGAAAAGCCCTTAGAAATA
TTTGGTAAAATTTAATAAGAAATATCACTGGCCAAGCAACATGGGCCACG
GTTGATGACAGGGCTTGAAGAGGCCATCTTTGAGATCAATGAATACACTG
ATTTAAATACTGCTACATTCAACCAAAGAAATCACTTCCAGATGATCCAT
CCATTACCATATTATCATCATATAATTTCATCAAGACACGTCCAATTCTG
ACAAACATCAAGCAAGCATTCGCACCAACGGTCCTTCAGATACGCAAAAA
CAATTCCATCATTAAAATGCTTATCCACCAACAGATAAAGC
Run BLAST on NCBI

transcript from alignment at sc0001620:12344..12750-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037381 ID=TCONS_00037381|Name=TCONS_00037381|organism=Clytia hemisphaerica|type=transcript|length=407bp|location=Sequence derived from alignment at sc0001620:12344..12750- (Clytia hemisphaerica)
GCCCACCTCATCGAAATGGTTGGTTAGTAGGAGAAAAGCCCTTAGAAATA
TTTGGTAAAATTTAATAAGAAATATCATTGAATTGATATCGAGACAACTT
AATTTTGCCAACTCTCTCCAAATGAACGATATAATTTAAAACACTGGCCA
AGCAACATGGGCCACGGTTGATGACAGGGCTTGAAGAGGCCATCTTTGAG
ATCAATGAATACACTGATTTAAATACTGCTACATTCAACCAAAGAAATCA
CTTCCAGATGATCCATCCATTACCATATTATCATCATATAATTTCATCAA
GACACGTCCAATTCTGACAAACATCAAGCAAGCATTCGCACCAACGGTCC
TTCAGATACGCAAAAACAATTCCATCATTAAAATGCTTATCCACCAACAG
ATAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022158XLOC_022158Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037381-exon-sc0001620-1575043694:12675..12750TCONS_00037381-exon-sc0001620-1575043694:12675..12750Clytia hemisphaericaexon
TCONS_00037381-exon-sc0001620-1575043694:12344..12608TCONS_00037381-exon-sc0001620-1575043694:12344..12608Clytia hemisphaericaexon
TCONS_00037381-exon-sc0001620-1510915933:12675..12750TCONS_00037381-exon-sc0001620-1510915933:12675..12750Clytia hemisphaericaexon
TCONS_00037381-exon-sc0001620-1510915933:12344..12608TCONS_00037381-exon-sc0001620-1510915933:12344..12608Clytia hemisphaericaexon
TCONS_00037381-exon-sc0001620-1491911889:12675..12750TCONS_00037381-exon-sc0001620-1491911889:12675..12750Clytia hemisphaericaexon
TCONS_00037381-exon-sc0001620-1491911889:12344..12608TCONS_00037381-exon-sc0001620-1491911889:12344..12608Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001620supercontigsc0001620:12344..12750 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.513246	0.332549	0.529358	0	0	0	0	0	1.13079	0.0513088	0	0	0	0	0	1.70822	0	0.734199	0.943214	0.501571	0	0.490048	1.08384	0	0	0	1.7232	0.626156	0.0833028	0.0989336
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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