TCONS_00037376 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037376
Unique NameTCONS_00037376
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length296

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037376 ID=TCONS_00037376|Name=TCONS_00037376|organism=Clytia hemisphaerica|type=transcript|length=296bp
CAAAATCACCAGGATCAAAATTGGACCAAACTCTCAAAAAGACGTTAAAA
GACGTTAAAGAAGAAGTCAAAAACTTGGTCAAACAAAACCCACCATCCCA
TCCAACAATAAAATGGCTTTTCAGATTAGTGCTATCGGAGCTCGGTGAAA
AAGGCGAACACTCATTCTTTCGCAAACTCTATTCCCTCAAAGACGACCCT
GTTCTTCAAGATACTGTGATTCTCAGTTCCATCAGTTTCCTCACTAATGT
CCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTTTTCTCGTGG
Run BLAST on NCBI

transcript from alignment at sc0001619:22490..23543-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037376 ID=TCONS_00037376|Name=TCONS_00037376|organism=Clytia hemisphaerica|type=transcript|length=1054bp|location=Sequence derived from alignment at sc0001619:22490..23543- (Clytia hemisphaerica)
CAAAATCACCAGGATCAAAATTGGACCAAACTCTCAAAAAGGTAACTTAT
CAATTTTATTCTCAAAACTGTAAAAATTCTTTAATACAAGCACATGGATA
CCTGTACACGTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGCATTTA
AGAACATTTAAGGCTGAAAATTGCTAAAAAAATAAGCACATCCAGGCTCA
GCCAAATTTTAAGTGTTCTAATAAAAAAAAAAACGTGTATTAAATTGAAT
ATTTCAATTTACGAATTGAATTGTAAAAAATCTTTCATTTCATTTCCAGA
CGTTAAAAGACGTTAAAGAAGAAGTCAAAAACTTGGTCAAACAAAACCCA
CCATCCCATCCAACAATAAAATGGCTTTTCAGATTAGTGCTATCGGAGCT
CGGTGAAAAAGGCGAACACTCATTCTTTCGCAAACTCTATTCCCTCAAAG
ACGACCCTGTTCTTCAAGATACTGTGATTCTCAGTTCCATCAGTTTCCTC
ACTAATGTCCAAAAGAAAATGCATCAGGAGATTGACGTCCTTCTTTTCTC
GTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022153XLOC_022153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037376-exon-sc0001619-1575043694:23503..23543TCONS_00037376-exon-sc0001619-1575043694:23503..23543Clytia hemisphaericaexon
TCONS_00037376-exon-sc0001619-1575043694:22490..22744TCONS_00037376-exon-sc0001619-1575043694:22490..22744Clytia hemisphaericaexon
TCONS_00037376-exon-sc0001619-1510915933:23503..23543TCONS_00037376-exon-sc0001619-1510915933:23503..23543Clytia hemisphaericaexon
TCONS_00037376-exon-sc0001619-1510915933:22490..22744TCONS_00037376-exon-sc0001619-1510915933:22490..22744Clytia hemisphaericaexon
TCONS_00037376-exon-sc0001619-1491911889:23503..23543TCONS_00037376-exon-sc0001619-1491911889:23503..23543Clytia hemisphaericaexon
TCONS_00037376-exon-sc0001619-1491911889:22490..22744TCONS_00037376-exon-sc0001619-1491911889:22490..22744Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001619supercontigsc0001619:22490..23543 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.7138	0.424733	0.435447	0.609455	0.278148	0	0	0.512377	0	0.335516	2.10844	3.83177	2.61233	0	1.62291	0.770826	0	0	4.98791	2.01617	1.47459	0.487366
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037376 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top