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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037373 ID=TCONS_00037373|Name=TCONS_00037373|organism=Clytia hemisphaerica|type=transcript|length=1041bp
GTCCAAAAGAAAATGCACCAGGAGATTGACGTCCTTCTTTTCTCGTGGAC
CAAGAAATTAATCATATGTGTTGAAATCAAACGGACACTAACTATAAAAG
CTTTTGACCAGTTGGATAAATACCATAAATTGATAGAGGAGAGGTTGAGT
GATCAATTGGGACACGGTTGGACGTATCATCCAGTCATTTGTGTTGAAAT
AGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAAACAGATT
TGAAATGTTGGTTATCCCCCTTGTTGGCAAAATACCCGACCGTTCCCTCT
GGAATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTAAGAAT
CGTTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCATTACAACGTCAA
ACTGGGTCGAGTATATCTCGCAAGCTATCGATACCGTCTGCACCACTGAC
AACATACTCTTTTACAGTCAGCATCAACTTCCCATCATGAAGACAGACAC
TTCTGAATTCAATAGGATCCTCTTTTATGCCCCTTACGGATGCGGAAAGT
CTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGAATGAAGAAGTAC
AAAGGACATGTTATGTATGTCATTGAGAGGAAATATGATCTAGAAACCCT
TCTTGAGTGGAGATTGAAAGACGAATTGGGAAAAGAACACGGAGTTGACG
TTTATGGATACAGAGAATACTCCGGCATTAACGATATCAACAAAATGGTT
AAAGAGGAAATTGAAAAGCTGATGGAGAGGATTCGAACAAGAAACATCAA
AGCGTTATTCATCGATGAGTGTTGGATTTCCTATAATCGATCGAAAGAAA
TGATAATGAAAGTCAAACAACACGTTGAGGTAATTTGGATTGCATCAAAC
GGATTGGGTCATCGGAGTATTTTAACAGGTAATGAAGATCTTTCGATGTA
TGTCGATTTCATGAAATATGAACTTGACGTGAATTTAAGAAACTGTGAAA
GTATCGTTAGAGAGGCATTAAGCTTTGAAGAAAGAGATATT Run BLAST on NCBI protein sequence of TCONS_00037373-protein >TCONS_00037373-protein ID=TCONS_00037373-protein|Name=TCONS_00037373-protein|organism=Clytia hemisphaerica|type=polypeptide|length=347bp
VQKKMHQEIDVLLFSWTKKLIICVEIKRTLTIKAFDQLDKYHKLIEERLS
DQLGHGWTYHPVICVEIDDLSFNNQHYIDQETDLKCWLSPLLAKYPTVPS
GIPFIPAVNQVKDLLRIVVFAIHASKTAPITTSNWVEYISQAIDTVCTTD
NILFYSQHQLPIMKTDTSEFNRILFYAPYGCGKSFILQEKAKQLSGMKKY
KGHVMYVIERKYDLETLLEWRLKDELGKEHGVDVYGYREYSGINDINKMV
KEEIEKLMERIRTRNIKALFIDECWISYNRSKEMIMKVKQHVEVIWIASN
GLGHRSILTGNEDLSMYVDFMKYELDVNLRNCESIVREALSFEERDI Run BLAST on NCBI transcript from alignment at sc0001619:3439..5062- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037373 ID=TCONS_00037373|Name=TCONS_00037373|organism=Clytia hemisphaerica|type=transcript|length=1624bp|location=Sequence derived from alignment at sc0001619:3439..5062- (Clytia hemisphaerica)
GTCCAAAAGAAAATGCACCAGGAGATTGACGTCCTTCTTTTCTCGTGGAC
CAAGAAATTAATCATATGTGTTGAAATCAAACGGACACTAACTATAAAAG
CTTTTGACCAGTTGGATAAATACCATAAATTGATAGAGGAGAGGTTGAGT
GATCAATTGGGACACGGTTGGACGTATCATCCAGTCATTTGTGTTGAAAT
AGACGACCTTTCTTTTAACAATCAACATTACATTGACCAAGAAACAGATT
TGAAATGTTGGTTATCCCCCTTGTTGGCAAAATACCCGACCGTTCCCTCT
GGAATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGACCTCCTAAGAAT
CGTTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCATTACAACGTCAA
ACTGGGTCGAGTATATCTCGCAAGCTATCGATACCGTCTGCACCACTGAC
AACATACTCTTTTACAGTCAGCATCAACTTCCCATCATGAAGACAGACAC
TTCTGAATTCAATAGGATCCTCTTTTATGCCCCTTACGGATGCGGAAAGT
CTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGAATGAAGAAGTAC
AAAGGACATGTTATGTATGTCATTGAGAGGAAATATGATCTAGAAACCCT
TCTTGAGTGGAGATTGAAAGACGAATTGGGAAAAGAACACGGAGTTGACG
TTTATGGATACAGAGAATACGTAAGTTGCATTTTGAATCTAAATTGAATA
ATTTTCTAATTTTAACTAAATAAAAACGGCTTTGATTGAATGATCGCCTG
CAAACTATGTTGCAATACATTGTTTTATCGATTATAAACGATATCGTAGA
ATAACTGAAAAGAGCAGTAAAAGTAAAAGAAAATTGAGATCGTTTTAAGA
CTGATGTCAACGCAGATTCATGGTTTGTTTATTGCATTGTTTCTATTCGG
AAAAAAAACTTTCTAATCCCCAAGTGTGCGAAAATTAAGCTTTTTATGTA
TGAGAGACTGATGAGTGACCATTTTGAACTTAAAAAATGAAACAACTTTA
TAAAATTAATATTGAACTGATCTACACTTAATACTGTAAATATTTTAAGC
TTACTGGTATTATTGAAAAGNTTGCACTGATATATTATTAATACTGTAAA
TGTTTTAAGCTTACCGGTATTATTGAAGAAAAGTCAGAAACGATAGTTCA
ATTAAAATTTTATCGTGCATTTTTCCGTAAGAGACTTTTAGGATCCTTTG
CATGCAAATGAACAGATTTACTTAAAATAATATCTTTCTTTTCTTACAAA
CAGTCCGGCATTAACGATATCAACAAAATGGTTAAAGAGGAAATTGAAAA
GCTGATGGAGAGGATTCGAACAAGAAACATCAAAGCGTTATTCATCGATG
AGTGTTGGATTTCCTATAATCGATCGAAAGAAATGATAATGAAAGTCAAA
CAACACGTTGAGGTAATTTGGATTGCATCAAACGGATTGGGTCATCGGAG
TATTTTAACAGGTAATGAAGATCTTTCGATGTATGTCGATTTCATGAAAT
ATGAACTTGACGTGAATTTAAGAAACTGTGAAAGTATCGTTAGAGAGGCA
TTAAGCTTTGAAGAAAGAGATATT Coding sequence (CDS) from alignment at sc0001619:3439..5062- >TCONS_00037373 ID=TCONS_00037373|Name=TCONS_00037373|organism=Clytia hemisphaerica|type=CDS|length=2082bp|location=Sequence derived from alignment at sc0001619:3439..5062- (Clytia hemisphaerica)
TCCGGCATTAACGATATCAACAAAATGGTTAAAGAGGAAATTGAAAAGCT
GATGGAGAGGATTCGAACAAGAAACATCAAAGCGTTATTCATCGATGAGT
GTTGGATTTCCTATAATCGATCGAAAGAAATGATAATGAAAGTCAAACAA
CACGTTGAGGTAATTTGGATTGCATCAAACGGATTGGGTCATCGGAGTAT
TTTAACAGGTAATGAAGATCTTTCGATGTATGTCGATTTCATGAAATATG
AACTTGACGTGAATTTAAGAAACTGTGAAAGTATCGTTAGAGAGGCATTA
AGCTTTGAAGAAAGAGATATTGTCCAAAAGAAAATGCACCAGGAGATTGA
CGTCCTTCTTTTCTCGTGGACCAAGAAATTAATCATATGTGTTGAAATCA
AACGGACACTAACTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAA
TTGATAGAGGAGAGGTTGAGTGATCAATTGGGACACGGTTGGACGTATCA
TCCAGTCATTTGTGTTGAAATAGACGACCTTTCTTTTAACAATCAACATT
ACATTGACCAAGAAACAGATTTGAAATGTTGGTTATCCCCCTTGTTGGCA
AAATACCCGACCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAATCA
AGTTAAAGACCTCCTAAGAATCGTTGTGTTTGCAATTCATGCTTCAAAAA
CAGCACCCATTACAACGTCAAACTGGGTCGAGTATATCTCGCAAGCTATC
GATACCGTCTGCACCACTGACAACATACTCTTTTACAGTCAGCATCAACT
TCCCATCATGAAGACAGACACTTCTGAATTCAATAGGATCCTCTTTTATG
CCCCTTACGGATGCGGAAAGTCTTTCATCCTTCAGGAGAAAGCAAAACAA
TTGAGTGGAATGAAGAAGTACAAAGGACATGTTATGTATGTCATTGAGAG
GAAATATGATCTAGAAACCCTTCTTGAGTGGAGATTGAAAGACGAATTGG
GAAAAGAACACGGAGTTGACGTTTATGGATACAGAGAATACTCCGGCATT
AACGATATCAACAAAATGGTTAAAGAGGAAATTGAAAAGCTGATGGAGAG
GATTCGAACAAGAAACATCAAAGCGTTATTCATCGATGAGTGTTGGATTT
CCTATAATCGATCGAAAGAAATGATAATGAAAGTCAAACAACACGTTGAG
GTAATTTGGATTGCATCAAACGGATTGGGTCATCGGAGTATTTTAACAGG
TAATGAAGATCTTTCGATGTATGTCGATTTCATGAAATATGAACTTGACG
TGAATTTAAGAAACTGTGAAAGTATCGTTAGAGAGGCATTAAGCTTTGAA
GAAAGAGATATTGTCCAAAAGAAAATGCACCAGGAGATTGACGTCCTTCT
TTTCTCGTGGACCAAGAAATTAATCATATGTGTTGAAATCAAACGGACAC
TAACTATAAAAGCTTTTGACCAGTTGGATAAATACCATAAATTGATAGAG
GAGAGGTTGAGTGATCAATTGGGACACGGTTGGACGTATCATCCAGTCAT
TTGTGTTGAAATAGACGACCTTTCTTTTAACAATCAACATTACATTGACC
AAGAAACAGATTTGAAATGTTGGTTATCCCCCTTGTTGGCAAAATACCCG
ACCGTTCCCTCTGGAATACCTTTCATCCCAGCAGTAAATCAAGTTAAAGA
CCTCCTAAGAATCGTTGTGTTTGCAATTCATGCTTCAAAAACAGCACCCA
TTACAACGTCAAACTGGGTCGAGTATATCTCGCAAGCTATCGATACCGTC
TGCACCACTGACAACATACTCTTTTACAGTCAGCATCAACTTCCCATCAT
GAAGACAGACACTTCTGAATTCAATAGGATCCTCTTTTATGCCCCTTACG
GATGCGGAAAGTCTTTCATCCTTCAGGAGAAAGCAAAACAATTGAGTGGA
ATGAAGAAGTACAAAGGACATGTTATGTATGTCATTGAGAGGAAATATGA
TCTAGAAACCCTTCTTGAGTGGAGATTGAAAGACGAATTGGGAAAAGAAC
ACGGAGTTGACGTTTATGGATACAGAGAATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037373-exon-sc0001619-1575043694:4343..5062 | TCONS_00037373-exon-sc0001619-1575043694:4343..5062 | Clytia hemisphaerica | exon |
| TCONS_00037373-exon-sc0001619-1575043694:3439..3759 | TCONS_00037373-exon-sc0001619-1575043694:3439..3759 | Clytia hemisphaerica | exon |
| TCONS_00037373-exon-sc0001619-1510915933:4343..5062 | TCONS_00037373-exon-sc0001619-1510915933:4343..5062 | Clytia hemisphaerica | exon |
| TCONS_00037373-exon-sc0001619-1510915933:3439..3759 | TCONS_00037373-exon-sc0001619-1510915933:3439..3759 | Clytia hemisphaerica | exon |
| TCONS_00037373-exon-sc0001619-1491911889:4343..5062 | TCONS_00037373-exon-sc0001619-1491911889:4343..5062 | Clytia hemisphaerica | exon |
| TCONS_00037373-exon-sc0001619-1491911889:3439..3759 | TCONS_00037373-exon-sc0001619-1491911889:3439..3759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001619 | supercontig | sc0001619:3439..5062 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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