TCONS_00037371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037371
Unique NameTCONS_00037371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length895

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037371 ID=TCONS_00037371|Name=TCONS_00037371|organism=Clytia hemisphaerica|type=transcript|length=895bp
CTGTTTCAAATCATTCTCTTCTGATCTAAATGGGTAAAACAACATTAGAA
tatggtgggaaaatttttctggatgtttgtttttgttaggaGTGTAGTAC
CTCAAAACTTTTGGAACTTTACGAAGCTTAAGTTTTTCCTTACTGATGAG
TAATTTGGCCGATTTTGGAAGTGTTTGGGGTTCTTGATGATTCACTGCAC
TTGTTGAATCATCTAGTACAGTAGGCTgccaatcattttcatcatttgta
tttttttgtgtcTAAAGTATAGTTTGCTCAGAATGTCGCATAACACATAG
TATTGAATTGCCCTGTGTTTGGACGGTCAATATATCTGTTTAGCatattt
cgtttgaaaagatCATCAGAATCCTCAGGCAACTcctcaatttcttcttt
tgacttgaaaattctGTACCTTTGATCAGGTAAGTTAGTGTTAACAAATG
AAATAGCAGGAAAGCATTTTCTAAGCCACAGTTCAGGCATTGTTAAGAAA
ACTGCTTCCTGGATTGAGCATTCTCTATTAGAGTTGTAAACTTTGGCTAT
TTTAGACATTTTCTCAAACTGACTGTCATTTGAATCTTTGGCCTGTTTTA
ATGCTTCTTGCATTGCAGTtgaacactttttgaaaaataggcaCACATGT
ATGTAACTGCCTTGTATGCATTAAAAACTGGCTGAATATCGATGTTGGCC
TCCCATGCTAGGAGGCTTTCTGCAAAATAATTGTTGACAAAACAAGAATA
TGGGTCACGTTTTAGAAACAAATGCTGATCTTTGTCTGGTAAGATTGATA
AGTAATATTCATATGTTTCATAATTTAACCCTAAAGAATCCAAAATTGTA
TCAATAGATCCAATTTCAATATACTCAGGCTTATCAGGATCCANN
Run BLAST on NCBI

protein sequence of TCONS_00037371-protein

>TCONS_00037371-protein ID=TCONS_00037371-protein|Name=TCONS_00037371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MQEALKQAKDSNDSQFEKMSKIAKVYNSNRECSIQEAVFLTMPELWLRKC
FPAISFVNTNLPDQRYRIFKSKEEIEELPEDSDDLFKRNMLNRYIDRPNT
GQFNTMCYATF
Run BLAST on NCBI

transcript from alignment at sc0001617:76770..77664

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037371 ID=TCONS_00037371|Name=TCONS_00037371|organism=Clytia hemisphaerica|type=transcript|length=895bp|location=Sequence derived from alignment at sc0001617:76770..77664 (Clytia hemisphaerica)
NNTGGATCCTGATAAGCCTGAGTATATTGAAATTGGATCTATTGATACAA
TTTTGGATTCTTTAGGGTTAAATTATGAAACATATGAATATTACTTATCA
ATCTTACCAGACAAAGATCAGCATTTGTTTCTAAAACGTGACCCATATTC
TTGTTTTGTCAACAATTATTTTGCAGAAAGCCTCCTAGCATGGGAGGCCA
ACATCGATATTCAGCCAGTTTTTAATGCATACAAGGCAGTTACATACATG
TGtgcctatttttcaaaaagtgttcaACTGCAATGCAAGAAGCATTAAAA
CAGGCCAAAGATTCAAATGACAGTCAGTTTGAGAAAATGTCTAAAATAGC
CAAAGTTTACAACTCTAATAGAGAATGCTCAATCCAGGAAGCAGTTTTCT
TAACAATGCCTGAACTGTGGCTTAGAAAATGCTTTCCTGCTATTTCATTT
GTTAACACTAACTTACCTGATCAAAGGTACagaattttcaagtcaaaaga
agaaattgaggAGTTGCCTGAGGATTCTGATGatcttttcaaacgaaata
tGCTAAACAGATATATTGACCGTCCAAACACAGGGCAATTCAATACTATG
TGTTATGCGACATTCTGAGCAAACTATACTTTAgacacaaaaaaatacaa
atgatgaaaatgattggcAGCCTACTGTACTAGATGATTCAACAAGTGCA
GTGAATCATCAAGAACCCCAAACACTTCCAAAATCGGCCAAATTACTCAT
CAGTAAGGAAAAACTTAAGCTTCGTAAAGTTCCAAAAGTTTTGAGGTACT
ACACtcctaacaaaaacaaacatccagaaaaattttcccaccataTTCTA
ATGTTGTTTTACCCATTTAGATCAGAAGAGAATGATTTGAAACAG

Coding sequence (CDS) from alignment at sc0001617:76770..77664

>TCONS_00037371 ID=TCONS_00037371|Name=TCONS_00037371|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0001617:76770..77664 (Clytia hemisphaerica)
ATGCAAGAAGCATTAAAACAGGCCAAAGATTCAAATGACAGTCAGTTTGA
GAAAATGTCTAAAATAGCCAAAGTTTACAACTCTAATAGAGAATGCTCAA
TCCAGGAAGCAGTTTTCTTAACAATGCCTGAACTGTGGCTTAGAAAATGC
TTTCCTGCTATTTCATTTGTTAACACTAACTTACCTGATCAAAGGTACag
aattttcaagtcaaaagaagaaattgaggAGTTGCCTGAGGATTCTGATG
atcttttcaaacgaaatatGCTAAACAGATATATTGACCGTCCAAACACA
GGGCAATTCAATACTATGTGTTATGCGACATTCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022148XLOC_022148Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037371-proteinTCONS_00037371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037371-exon-sc0001617-1491911889:76770..77664TCONS_00037371-exon-sc0001617-1491911889:76770..77664Clytia hemisphaericaexon
TCONS_00037371-exon-sc0001617-1510915933:76770..77664TCONS_00037371-exon-sc0001617-1510915933:76770..77664Clytia hemisphaericaexon
TCONS_00037371-exon-sc0001617-1575043694:76770..77664TCONS_00037371-exon-sc0001617-1575043694:76770..77664Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001617supercontigsc0001617:76770..77664 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.24276	4.2548	3.7115	3.29742	2.96082	2.8085	2.10631	2.61457	1.69623	0.747224	1.23581	1.98048	1.22346	0.761481	1.33564	1.53772	1.08427	1.42731	1.62366	1.93357	3.0569	3.17031	1.43057	1.68213	1.09125	2.09421	4.27247	4.14367	2.50822	3.57078
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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