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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037360 ID=TCONS_00037360|Name=TCONS_00037360|organism=Clytia hemisphaerica|type=transcript|length=436bp
GATTCCTGAAGTTATTGGTGCAGTATACAATGATGGGACCCTTGAAGGAT
ATATAATTCAGCACTGTCCAAGCACAGAGCAAAACCAGCTCAAAAAGAAA
AACTGGCGATCGTACTTAACAATGCACGACATGAATTCTTTTACCTCAAT
CGTTAAAGCAATGAAGAACAAGGCTTCATTACTGACAATACAGTATGTCC
AAGGCATAAAGTATGACCACTTTTTGTCACGGCTGTTTCTGAAAACCATA
GACGCATACAACGAATCAGACAATCCAGTCAAACTAACAACCTTAATTCG
TCAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTCAATCAGAGT
TAAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAacggaaaaattcaa
aaagtggaGGAGGAACAATCGGGCTATACAGTTACC Run BLAST on NCBI transcript from alignment at sc0001617:43166..48460- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037360 ID=TCONS_00037360|Name=TCONS_00037360|organism=Clytia hemisphaerica|type=transcript|length=5295bp|location=Sequence derived from alignment at sc0001617:43166..48460- (Clytia hemisphaerica)
GATTCCTGAAGTTATTGGTGCAGTATACAATGATGGGACCCTTGAAGGAT
ATATAATTCAGCACTGTCCAAGCACAGAGCAAAACCAGCTCAAAAAGAAG
TTAGTACTGTACTTTTATTTCGGCGTACTGTACAACCAGGACCCGGACTT
TTACGAAAACACGGACCCCCCTCAAATTTTTACGAAAACACGGACCCTCC
TCAAATTTTTTACGAAAACACGGACCCCCCTCAAATTTTGGCGAAAACAC
GGACCCCTCAGGAAAACTTTCGAGAAAACACGAATCCATATTTCCATAAA
TATTTCCCATATAAACAGTTCCCAATTTTCGATAAGTCGAAGTCTAAGTA
TATAAATGCGCATAAATCGAGGGCTGAAAATGAGATTTTCCTAGGCATAT
TGAGTCTCGACTTGATTTTTTCGTGTGCTTATAGAAAAAGAGAGTACTTA
AATGTCACAAAATTTCGCGTGCAGAAAATTTCACTAGTCAGGCCATTCGC
GAAATTTCGCGTATTTTGATGGATTTTCGCGACCATTTACTTTCGCGAAT
TTTCTGGCGTTAAAATAGATGATTAAGATAAATTGACGGAAATTCGATAG
AAGAATTTGATTCATTCTATTCAAACAAAGCGATTTGATATTTGGGAATT
TGGGTTTTTAAAAAGGCTCCTTATCGAAAATTGGGAACTGTTTATATGGG
AAATGTTTATGGAAATATGGATTCGTGTTTTCTNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTT
GAAAATATTCTGACTTTTAAAGATGACAATGAGAACAAGAGTCCTTCTTA
ATAAACTGTTTTAAAATATGTTTACTTTATGTTTAGAGAAAAAAAATTCA
TTAACAAATAAATTAGAAAAATAGCAGAAGAAGACAAACGAGGAAGTGAG
AAAAAAAACAGGTAATGTATATTTTTAGTTATGTTCAGTACTTTTTCTTT
AATGGTATTGCAGAAAGGGAAAGACTTTTTCAGTGTGTCCTTACAAGATT
GGAAAATTTTGCTCCCTTAAATGTCAAAGGTAATATTTTGGTAAATCAAG
ATAGTGCAAAGGAGAATAAAAAGTTATCATATCATTTTTTTAGTAAATGG
ATAGAAGAAATTAAAGATGGACGTCTTTATATTGATGGCAGGGAACACCT
GAATTGGATTCCTGAAGTTATTGGTGCAGTATACAATGATGGGACCCTTG
AAGGATATATAATTCAGCACTGTCCAAGCACAGAGCAAAACCAGCTCAAA
AAGAAGTTAGTACTGTACTTTTATTTCGGCGTACTGTACAACCAGGACCC
GGACCGGACCCCGGACTTTTACGAAAACACGGAACCCCTCAAATTTTTCA
GTTTAAGGGGGTCCGTGTTTTCGCCAAAATCTGAGGGGGTCCGTGTTTTC
GTAAAAAAATTGAGGGGGGTCCGTGTTTTCGTAAAGGTCCGGGGTCCGGG
TTTTCTCAGGGTCCGGGGTCCGGTCCGGGTCCTGGTTGTACAGTACGCCT
TTTATTTCCAAAACCCAATTTGCTTGAAAATTGGGCCTATAGAGATATTT
AACATTGTAGTGATGAAAGGGCCAATGACATAGCATCAGCAATCTAAGAA
AAGCGTAGTTTTGGAGATAACATTGTCCTACGAAACGTTTACCATCTGCC
GCATAATATCTTAAATTTTCTTTGGTAAGCTTGAGTACATAATCTCCTGT
TGATTTTCTGAAAGCTCTTTAGTTTTGCGACAAAAAATCACATTTCTTTT
ATAAGCAACCAGGTTGCTAAGGGTCAAGGCCTCAAGTTTGCTTTTTTTTT
ACTATTTTGTAAAGTAAAAGCATTTTAGATAATCTAAACATGACAGACGA
TGTTAAAAATTCCAAATGGCTTTTAATGTTTTAGAAAACTGTCCTTATGG
TTATGCGGCTAATCAGGGCTAATGGCAATGGACCTTTTTTAAAGTATGCC
AGCAGTGAAATTCTTTAACCCTTTCAGTCCCGATGTTCTGACGGCTACTG
TCCCAGAGCAAATTTTACGAATTTCACTTGCCTGTAAGTAATGGGCCATA
TCTCGATAGAGAAGCGTTCTTTTGCAATGCAATTTGCACCCTTTTTTTCT
CATAGGATTTAGGTTATTTTGACACCAAAACCTTCCCAATAAAGTTTCTC
AATATTGTAAAAAGAATGCAAATGTGACCATGAAAATGAGTTTTTACCGA
AAATTTTGACTTTATCGACAGAGATAAATAGTATAAAAAAATTATACAGT
GATCGGACAGCCAAATATCTAAAATATAGGTTCCTCTATCTATCATCTTG
CAAAAAATTAGCAAATATAACTGTCAAAATCACTCACAATCAAGATTTGA
ATTTCAAAATTCGACCTTTTTGGAGATAGGAGGTTTTGCCCGGGAAAAAT
TTCATCTATTTTGCATTTATCATAAATTTCGATAGAAAATTGCTATTGAC
AAGCGGTTTTTTGTATGGTGCGCCAAAATCTCTTTATTTTGATTTTAATT
TGGTTCCAGTCCCCTTTATTACGCCAAAACTACACAAATTGATAAAAACT
AGACCCCCCGCCCTGCGGGTGCGTGGGACACAGTGAACTTACTAGGGTAC
CCGCCCTGCGGGTTCGTGGGACTGAAAGGGTTAAGGATATATCAGAAAAC
AATACACGTTGAAAGTCTACCCAAAAACACTGATGTCCCAGAATTTCCCG
GCTGTTTCTGAAAACCATAGACGCATACAACGAATCAGACAATCCAGTCA
AACTAACAACCTTAATTGTGAGTATATCAGATAAGCTCTGTCTAGGTAGA
CTTTTAATAATGGTGTTCTACCTGGCTGCCGAACTATTTACAACTCTGCC
TTTCAGATTGAAAGAAAGGTCTACATGAAAATTAATTCCCTTATAAATAT
GAAATTTAGGAATTACAGAATTAGTTTCTGTTGTAGATTGCTACAGATTT
TCAATCAAAGTTTTCGTGGGTAGACACCCAAAAATAATGTGATTATTATT
ATTATTCCCGCTAAAATTAGTCTCTTATTAAGGTAGCCACAACAGGCTAC
AAAGTATTGTTTAGTATTCAGCATTTTAATAATTATCAATAACCATTTTA
TACTTTTTCTTTTCTTTCTTCAGCGTCAGGGTAAGCAAAGTGAAGATAGN
AACTTACTAGGGTACCCGCCCTGCGGGTTCGTGGGACTGAAAGGGTTAAG
GATATATCAGAAAACAATACACGTTGAAAGTCTACCCAAAAAAACTGATG
TCCCAGAATTTTTAGAATGTAAAATATTTATGTATGCATTATTTTTTTCC
AGAAACTGGCGATCGTACTTAACAATGCACGACATGAATTCTTTTACCTC
AATCGTTAAAGCAATGAAGAACAAGGCTTCATTACTGACAATACAGTATG
TCCAAGGCATAAAGTATGACCACTTTTTGTCACGGCTGTTTCTGAAAACC
ATAGACGCATACAACGAATCAGACAATCCAGTCAAACTAACAACCTTAAT
TGTGAGTATATCAGATAAGCTCTGTCTAGGTAGACTTTTAATAATGGTGT
TCTACCTGGCTGCCGAACTATTTACAACTCTGCCTTTCAGATTGAAAGAA
AGGTCTACATGAAAATTAATTCCCTTATAAATATGAAATTTAGGAATTAC
AGAATTAATTTCTGTTGTAGATTGCTACAGATTTTCAATCAAAGTTTTCG
TGGGTAGACACCCAAAAATAATGTGATTATTATTATTATTCCCGCTAAAA
TTAGTCTCTTATTAAGGTAGCTACAACAGGCTACAAAGTATTGTTTAGTA
ATCAGCATTTTAATAAATATCAATAACCATTTTATACTTTTTCTTTTCTT
TCTTCAGCGTCAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTC
AATCAGAGTTAAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAACGGA
AAAATTCAAAAAGTGGAGGAGGAACAATCGGGCTATACAGTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037360-exon-sc0001617-1575043694:48362..48460 | TCONS_00037360-exon-sc0001617-1575043694:48362..48460 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1575043694:43660..43858 | TCONS_00037360-exon-sc0001617-1575043694:43660..43858 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1575043694:43166..43303 | TCONS_00037360-exon-sc0001617-1575043694:43166..43303 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1510915933:48362..48460 | TCONS_00037360-exon-sc0001617-1510915933:48362..48460 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1510915933:43660..43858 | TCONS_00037360-exon-sc0001617-1510915933:43660..43858 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1510915933:43166..43303 | TCONS_00037360-exon-sc0001617-1510915933:43166..43303 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1491911889:48362..48460 | TCONS_00037360-exon-sc0001617-1491911889:48362..48460 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1491911889:43660..43858 | TCONS_00037360-exon-sc0001617-1491911889:43660..43858 | Clytia hemisphaerica | exon |
| TCONS_00037360-exon-sc0001617-1491911889:43166..43303 | TCONS_00037360-exon-sc0001617-1491911889:43166..43303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001617 | supercontig | sc0001617:43166..48460 - |
Blast
The following BLAST results are available for this feature:
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