TCONS_00037359 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037359
Unique NameTCONS_00037359
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037359 ID=TCONS_00037359|Name=TCONS_00037359|organism=Clytia hemisphaerica|type=transcript|length=488bp
AAGAAATTAAAGATGGACGTCTTTATATTGATGGCAGGGAACACCTGAAT
TGGATTCCTGAAGTTATTGGTGCAGTATACAATGATGGGACCCTTGAAGG
ATATATAATTCAGCACTGTCCAAGCACAGAGCAAAACCAGCTCAAAAAGA
AAAACTGGCGATCGTACTTAACAATGCACGACATGAATTCTTTTACCTCA
ATCGTTAAAGCAATGAAGAACAAGGCTTCATTACTGACAATACAGTATGT
CCAAGGCATAAAGTATGACCACTTTTTGTCACGGCTGTTTCTGAAAACCA
TAGACGCATACAACGAATCAGACAATCCAGTCAAACTAACAACCTTAATT
CGTCAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTCAATCAGA
GTTAAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAacggaaaaattc
aaaaagtggaGGAGGAACAATCGGGCTATACAGTTACC
Run BLAST on NCBI

protein sequence of TCONS_00037359-protein

>TCONS_00037359-protein ID=TCONS_00037359-protein|Name=TCONS_00037359-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
EIKDGRLYIDGREHLNWIPEVIGAVYNDGTLEGYIIQHCPSTEQNQLKKK
NWRSYLTMHDMNSFTSIVKAMKNKASLLTIQYVQGIKYDHFLSRLFLKTI
DAYNESDNPVKLTTLIRQGKQSEDTWAYRVQSELNRPGVVFFKRINGKIQ
KVEEEQSGYTVT
Run BLAST on NCBI

transcript from alignment at sc0001617:43166..46056-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037359 ID=TCONS_00037359|Name=TCONS_00037359|organism=Clytia hemisphaerica|type=transcript|length=2891bp|location=Sequence derived from alignment at sc0001617:43166..46056- (Clytia hemisphaerica)
AAGAAATTAAAGATGGACGTCTTTATATTGATGGCAGGGAACACCTGAAT
TGGATTCCTGAAGTTATTGGTGCAGTATACAATGATGGGACCCTTGAAGG
ATATATAATTCAGCACTGTCCAAGCACAGAGCAAAACCAGCTCAAAAAGA
AGTTAGTACTGTACTTTTATTTCGGCGTACTGTACAACCAGGACCCGGAC
CGGACCCCGGACTTTTACGAAAACACGGAACCCCTCAAATTTTTCAGTTT
AAGGGGGTCCGTGTTTTCGCCAAAATCTGAGGGGGTCCGTGTTTTCGTAA
AAAAATTGAGGGGGGTCCGTGTTTTCGTAAAGGTCCGGGGTCCGGGTTTT
CTCAGGGTCCGGGGTCCGGTCCGGGTCCTGGTTGTACAGTACGCCTTTTA
TTTCCAAAACCCAATTTGCTTGAAAATTGGGCCTATAGAGATATTTAACA
TTGTAGTGATGAAAGGGCCAATGACATAGCATCAGCAATCTAAGAAAAGC
GTAGTTTTGGAGATAACATTGTCCTACGAAACGTTTACCATCTGCCGCAT
AATATCTTAAATTTTCTTTGGTAAGCTTGAGTACATAATCTCCTGTTGAT
TTTCTGAAAGCTCTTTAGTTTTGCGACAAAAAATCACATTTCTTTTATAA
GCAACCAGGTTGCTAAGGGTCAAGGCCTCAAGTTTGCTTTTTTTTTACTA
TTTTGTAAAGTAAAAGCATTTTAGATAATCTAAACATGACAGACGATGTT
AAAAATTCCAAATGGCTTTTAATGTTTTAGAAAACTGTCCTTATGGTTAT
GCGGCTAATCAGGGCTAATGGCAATGGACCTTTTTTAAAGTATGCCAGCA
GTGAAATTCTTTAACCCTTTCAGTCCCGATGTTCTGACGGCTACTGTCCC
AGAGCAAATTTTACGAATTTCACTTGCCTGTAAGTAATGGGCCATATCTC
GATAGAGAAGCGTTCTTTTGCAATGCAATTTGCACCCTTTTTTTCTCATA
GGATTTAGGTTATTTTGACACCAAAACCTTCCCAATAAAGTTTCTCAATA
TTGTAAAAAGAATGCAAATGTGACCATGAAAATGAGTTTTTACCGAAAAT
TTTGACTTTATCGACAGAGATAAATAGTATAAAAAAATTATACAGTGATC
GGACAGCCAAATATCTAAAATATAGGTTCCTCTATCTATCATCTTGCAAA
AAATTAGCAAATATAACTGTCAAAATCACTCACAATCAAGATTTGAATTT
CAAAATTCGACCTTTTTGGAGATAGGAGGTTTTGCCCGGGAAAAATTTCA
TCTATTTTGCATTTATCATAAATTTCGATAGAAAATTGCTATTGACAAGC
GGTTTTTTGTATGGTGCGCCAAAATCTCTTTATTTTGATTTTAATTTGGT
TCCAGTCCCCTTTATTACGCCAAAACTACACAAATTGATAAAAACTAGAC
CCCCCGCCCTGCGGGTGCGTGGGACACAGTGAACTTACTAGGGTACCCGC
CCTGCGGGTTCGTGGGACTGAAAGGGTTAAGGATATATCAGAAAACAATA
CACGTTGAAAGTCTACCCAAAAACACTGATGTCCCAGAATTTCCCGGCTG
TTTCTGAAAACCATAGACGCATACAACGAATCAGACAATCCAGTCAAACT
AACAACCTTAATTGTGAGTATATCAGATAAGCTCTGTCTAGGTAGACTTT
TAATAATGGTGTTCTACCTGGCTGCCGAACTATTTACAACTCTGCCTTTC
AGATTGAAAGAAAGGTCTACATGAAAATTAATTCCCTTATAAATATGAAA
TTTAGGAATTACAGAATTAGTTTCTGTTGTAGATTGCTACAGATTTTCAA
TCAAAGTTTTCGTGGGTAGACACCCAAAAATAATGTGATTATTATTATTA
TTCCCGCTAAAATTAGTCTCTTATTAAGGTAGCCACAACAGGCTACAAAG
TATTGTTTAGTATTCAGCATTTTAATAATTATCAATAACCATTTTATACT
TTTTCTTTTCTTTCTTCAGCGTCAGGGTAAGCAAAGTGAAGATAGNAACT
TACTAGGGTACCCGCCCTGCGGGTTCGTGGGACTGAAAGGGTTAAGGATA
TATCAGAAAACAATACACGTTGAAAGTCTACCCAAAAAAACTGATGTCCC
AGAATTTTTAGAATGTAAAATATTTATGTATGCATTATTTTTTTCCAGAA
ACTGGCGATCGTACTTAACAATGCACGACATGAATTCTTTTACCTCAATC
GTTAAAGCAATGAAGAACAAGGCTTCATTACTGACAATACAGTATGTCCA
AGGCATAAAGTATGACCACTTTTTGTCACGGCTGTTTCTGAAAACCATAG
ACGCATACAACGAATCAGACAATCCAGTCAAACTAACAACCTTAATTGTG
AGTATATCAGATAAGCTCTGTCTAGGTAGACTTTTAATAATGGTGTTCTA
CCTGGCTGCCGAACTATTTACAACTCTGCCTTTCAGATTGAAAGAAAGGT
CTACATGAAAATTAATTCCCTTATAAATATGAAATTTAGGAATTACAGAA
TTAATTTCTGTTGTAGATTGCTACAGATTTTCAATCAAAGTTTTCGTGGG
TAGACACCCAAAAATAATGTGATTATTATTATTATTCCCGCTAAAATTAG
TCTCTTATTAAGGTAGCTACAACAGGCTACAAAGTATTGTTTAGTAATCA
GCATTTTAATAAATATCAATAACCATTTTATACTTTTTCTTTTCTTTCTT
CAGCGTCAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTCAATC
AGAGTTAAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAACGGAAAAA
TTCAAAAAGTGGAGGAGGAACAATCGGGCTATACAGTTACC

Coding sequence (CDS) from alignment at sc0001617:43166..46056-

>TCONS_00037359 ID=TCONS_00037359|Name=TCONS_00037359|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0001617:43166..46056- (Clytia hemisphaerica)
CGTCAGGGTAAGCAAAGTGAAGATACCTGGGCTTATCGAGTTCAATCAGA
GTTAAACAGACCTGGAGTGGTGTTTTTTAAAAGGATTAACGGAAAAATTC
AAAAAGTGGAGGAGGAACAATCGGGCTATACAGTTACCAAACTGGCGATC
GTACTTAACAATGCACGACATGAATTCTTTTACCTCAATCGTTAAAGCAA
TGAAGAACAAGGCTTCATTACTGACAATACAGTATGTCCAAGGCATAAAG
TATGACCACTTTTTGTCACGGCTGTTTCTGAAAACCATAGACGCATACAA
CGAATCAGACAATCCAGTCAAACTAACAACCTTAATTGAAATTAAAGATG
GACGTCTTTATATTGATGGCAGGGAACACCTGAATTGGATTCCTGAAGTT
ATTGGTGCAGTATACAATGATGGGACCCTTGAAGGATATATAATTCAGCA
CTGTCCAAGCACAGAGCAAAACCAGCTCAAAAAGAACGTCAGGGTAAGCA
AAGTGAAGATACCTGGGCTTATCGAGTTCAATCAGAGTTAAACAGACCTG
GAGTGGTGTTTTTTAAAAGGATTAACGGAAAAATTCAAAAAGTGGAGGAG
GAACAATCGGGCTATACAGTTACCAAACTGGCGATCGTACTTAACAATGC
ACGACATGAATTCTTTTACCTCAATCGTTAAAGCAATGAAGAACAAGGCT
TCATTACTGACAATACAGTATGTCCAAGGCATAAAGTATGACCACTTTTT
GTCACGGCTGTTTCTGAAAACCATAGACGCATACAACGAATCAGACAATC
CAGTCAAACTAACAACCTTAATTGAAATTAAAGATGGACGTCTTTATATT
GATGGCAGGGAACACCTGAATTGGATTCCTGAAGTTATTGGTGCAGTATA
CAATGATGGGACCCTTGAAGGATATATAATTCAGCACTGTCCAAGCACAG
AGCAAAACCAGCTCAAAAAGAACGTCAGGGTAAGCAAAGTGAAGATACCT
GGGCTTATCGAGTTCAATCAGAGTTAAACAGACCTGGAGTGGTGTTTTTT
AAAAGGATTAACGGAAAAATTCAAAAAGTGGAGGAGGAACAATCGGGCTA
TACAGTTACCAAACTGGCGATCGTACTTAACAATGCACGACATGAATTCT
TTTACCTCAATCGTTAAAGCAATGAAGAACAAGGCTTCATTACTGACAAT
ACAGTATGTCCAAGGCATAAAGTATGACCACTTTTTGTCACGGCTGTTTC
TGAAAACCATAGACGCATACAACGAATCAGACAATCCAGTCAAACTAACA
ACCTTAATTGAAATTAAAGATGGACGTCTTTATATTGATGGCAGGGAACA
CCTGAATTGGATTCCTGAAGTTATTGGTGCAGTATACAATGATGGGACCC
TTGAAGGATATATAATTCAGCACTGTCCAAGCACAGAGCAAAACCAGCTC
AAAAAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022139XLOC_022139Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037359-proteinTCONS_00037359-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037359-exon-sc0001617-1575043694:45906..46056TCONS_00037359-exon-sc0001617-1575043694:45906..46056Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1575043694:43660..43858TCONS_00037359-exon-sc0001617-1575043694:43660..43858Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1575043694:43166..43303TCONS_00037359-exon-sc0001617-1575043694:43166..43303Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1510915933:45906..46056TCONS_00037359-exon-sc0001617-1510915933:45906..46056Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1510915933:43660..43858TCONS_00037359-exon-sc0001617-1510915933:43660..43858Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1510915933:43166..43303TCONS_00037359-exon-sc0001617-1510915933:43166..43303Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1491911889:45906..46056TCONS_00037359-exon-sc0001617-1491911889:45906..46056Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1491911889:43660..43858TCONS_00037359-exon-sc0001617-1491911889:43660..43858Clytia hemisphaericaexon
TCONS_00037359-exon-sc0001617-1491911889:43166..43303TCONS_00037359-exon-sc0001617-1491911889:43166..43303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001617supercontigsc0001617:43166..46056 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.28751	0.844217	0.331202	0	1.84014	6.50776	2.63148	4.58348	2.45762	4.63033	4.34546	2.48364	0.357684	0.770544	1.26869	1.0208	1.22577	0.584301	0	0.692196	1.71731	0	0.230881	0	2.30632	3.76133	0.377172	0	0	0.372212
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037359 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top