TCONS_00037354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037354
Unique NameTCONS_00037354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length441

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037354 ID=TCONS_00037354|Name=TCONS_00037354|organism=Clytia hemisphaerica|type=transcript|length=441bp
CCTTTTGAGATGAGATGTCAAAATCTATTTCGATTTGATTTTGGGTCTTC
TCTGGCTCATTAGGTTCTTGCTTTCTTCTTACAGTTTCTTCCATTTGGTT
GCTTTCTTCCTTTTCGTCAGTTTCCTTGTCTAGGTCTTGCTTTCCTCGTT
CAGTTTCTTCCATTTGGTTGCTTTCTTTCCTTTCGTCAGTTTCCTTGTCT
TGGTCTTGCTTTCCTCGTTCAGTTTCTTCCACTTGGTTGCTTTCTTTCCT
TTCGTCAGTTTCCTTGTCTAGGTCTTTCTTTCCTCGTTCAGTTTCTTCCA
CTTGGTTGCTTTCTTTCCTTTCGTCAGTTTCCTTGTCTAGGTCTTTCTTT
CCTCGTTCAGTTTCTTCCACTTGGTTGCTTTCTTTCCTTTCATCAGTTTC
CTTGTCTAAGTCTTGATTTCCTTGTTCAGCTTCTTCCATTT
Run BLAST on NCBI

transcript from alignment at sc0001617:30116..30907+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037354 ID=TCONS_00037354|Name=TCONS_00037354|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0001617:30116..30907+ (Clytia hemisphaerica)
CCTTTTGAGATGAGATGTCAAAATCTATTTCGATTTGATTTTGGGTCTTC
TCTGGCTCATTAGGTTCTTGCTTTCTTCTTACAGTTTCTTCCATTTGGTT
GCTTTCTTCCTTTTCGTCAGTTTCCTTGTCTAGGTCTTGCTTTCCTCGTT
CAGTTTCTTCCATTTGGTTGCTTTCTTTCCTTTCGTCAGTTTCCTTGTCT
TGGTCCTGATTTCCTCGTTCAGTTTCTTCCACTTGGTTGCTTTCTTTCCT
TTCGTCAGTTTCCTTGTCTAGGTCTTTCTTTCCTCGTTCAGTTCTTCCAC
TTGGTTGCTTTCTTTCCTTTTGTCAGTTTCCTTGTCTAGGTCTTTCTTTC
CTCGTTCAGTTTCTTCCACTTGGTTGCTTTCTTTCCTTTCATCAATTTCC
TTGTCTAAGTCTTGATTTCCTTGTTCAGCTTCTTCCATTTGCATTTGGTT
GCTTTCTTTCATTTCGTCAGTTTCCTTGTCTAGGTCTTGGATTCCCTCgt
tcaattttttccatttggTTGCTTGCTTTCCTTTTGTCAGTTTCCTTGTC
TAGGTCTTGCTTTCCTCGTTCAGTTTCTTCCACTTGGTTGCTTTCTTTCC
TTTCGTCAGTTTCCTTGTCTAGGTCTTTCTTTCCTCGTTCAGTTTCTTCC
ACTTGGTTGCTTTCTTTCCTTTCGTCAGTTTCCTTGTCTAGGTCTTTCTT
TCCTCGTTCAGTTTCTTCCACTTGGTTGCTTTCTTTCCTTTCATCAGTTT
CCTTGTCTAAGTCTTGATTTCCTTGTTCAGCTTCTTCCATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022136XLOC_022136Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037354-exon-sc0001617-1491911889:30116..30317TCONS_00037354-exon-sc0001617-1491911889:30116..30317Clytia hemisphaericaexon
TCONS_00037354-exon-sc0001617-1510915933:30116..30317TCONS_00037354-exon-sc0001617-1510915933:30116..30317Clytia hemisphaericaexon
TCONS_00037354-exon-sc0001617-1575043694:30116..30317TCONS_00037354-exon-sc0001617-1575043694:30116..30317Clytia hemisphaericaexon
TCONS_00037354-exon-sc0001617-1491911889:30669..30907TCONS_00037354-exon-sc0001617-1491911889:30669..30907Clytia hemisphaericaexon
TCONS_00037354-exon-sc0001617-1510915933:30669..30907TCONS_00037354-exon-sc0001617-1510915933:30669..30907Clytia hemisphaericaexon
TCONS_00037354-exon-sc0001617-1575043694:30669..30907TCONS_00037354-exon-sc0001617-1575043694:30669..30907Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001617supercontigsc0001617:30116..30907 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	31.5295	27.6775	16.7129	22.1867	4.54743	7.33231	7.08654	13.5077	3.80982	1.96931	0	0	0	0	0	0.135549	0	0	0	0	7.99231	12.7501	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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