TCONS_00037351 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037351
Unique NameTCONS_00037351
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length249

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037351 ID=TCONS_00037351|Name=TCONS_00037351|organism=Clytia hemisphaerica|type=transcript|length=249bp
CTTTTCCAGTCAGACGAAACGAACTAAAAGCGTCGCAGCGCCCTCTGCCA
ATCATCTGTTGTATATTTTGAGTAAATGAATATCTACGCTCATGGTATCA
TACATGAAGTTTAGAGCTCGATGATTACATACGGTTGACGGTATTTATCa
gAGTGATTCAAAATCGATAAGCGGCATATAACCCAAAGCAATCGTCAAGC
TGCCATGTGGGATGCTCTTCCTCGATCTTGGAATGATCTCTAACAGGTT
Run BLAST on NCBI

transcript from alignment at sc0001616:45149..45788-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037351 ID=TCONS_00037351|Name=TCONS_00037351|organism=Clytia hemisphaerica|type=transcript|length=640bp|location=Sequence derived from alignment at sc0001616:45149..45788- (Clytia hemisphaerica)
CTTTTCCAGTCAGACGAAACGAACTAAAAGCGTCGCAGCGCCCTCTGCCA
ATCATCTGTTGTATATTTTGAGTAAATGAATATCTACGCTCATGGTATCA
TACATGAAGTTTAGAGCTCGATGATTACATACGGTTGACGGTATTTATCA
GGTAAATAATTTTTTGATCATATTAAATTTCAACAATAACCTACTAACGC
ATGGTTACTGGAGAGTGATCGAATTGAAACAACGTTGTCCCCACGAACCA
GTAGATTTGATAGCCCAGTCGGCAGCGCTGTTGAACTACTGATGCGAAAG
TCGTGAAATCCACCCTTTTGGTCAAACATCTAAATGCGAAGTTAAATTTC
AAGGCAACTTCATTTCTCCTCTTTAAAAGGATTTTAGGTACCTTCATAGG
CTGTATTTTTGTATAATAGACAGTAATAGACCTAATTTGAAAATGGCAAA
AAAAAATTGAAGAAGAAAATGAAGACGTTCTTAACATACCTGAAAGCTCA
AAAGTTTTCATTTTAAATCATCTAATCTTTCTTTTGATACAGAGTGATTC
AAAATCGATAAGCGGCATATAACCCAAAGCAATCGTCAAGCTGCCATGTG
GGATGCTCTTCCTCGATCTTGGAATGATCTCTAACAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022133XLOC_022133Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037351-exon-sc0001616-1575043694:45638..45788TCONS_00037351-exon-sc0001616-1575043694:45638..45788Clytia hemisphaericaexon
TCONS_00037351-exon-sc0001616-1575043694:45149..45246TCONS_00037351-exon-sc0001616-1575043694:45149..45246Clytia hemisphaericaexon
TCONS_00037351-exon-sc0001616-1510915933:45638..45788TCONS_00037351-exon-sc0001616-1510915933:45638..45788Clytia hemisphaericaexon
TCONS_00037351-exon-sc0001616-1510915933:45149..45246TCONS_00037351-exon-sc0001616-1510915933:45149..45246Clytia hemisphaericaexon
TCONS_00037351-exon-sc0001616-1491911889:45638..45788TCONS_00037351-exon-sc0001616-1491911889:45638..45788Clytia hemisphaericaexon
TCONS_00037351-exon-sc0001616-1491911889:45149..45246TCONS_00037351-exon-sc0001616-1491911889:45149..45246Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001616supercontigsc0001616:45149..45788 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
20.2293	20.1278	5.4386	0.647151	10.9526	12.8351	4.07849	7.70127	15.5288	16.8814	17.879	26.9852	16.3791	20.8666	16.8813	22.8766	20.3797	26.1913	8.30866	11.2111	16.3587	16.0956	23.1094	24.5182	8.53136	7.12792	13.0804	16.5934	13.6382	32.4793
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037351 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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