TCONS_00037350 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037350
Unique NameTCONS_00037350
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1134

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037350 ID=TCONS_00037350|Name=TCONS_00037350|organism=Clytia hemisphaerica|type=transcript|length=1134bp
CTTTTGCTTACAACGAATTGATTTGAATTTATTATATTTAGACCAAGCAG
TGATGGTCGAACAAGAGACAGCATGCGGTGAACAAGATCAGGATGTAGCT
AGATTAACAACAGACTGCACAACTTCAACTCCCAAgtctataaacaaaaa
attggaaGTTACTTCAGCAACAACACCAATTACTCCTTTGGCAAGAATGG
AACTGACATCTAAATATAATGAATATGATACAGGTGAGTTTATtgctaat
ctttttttttcaaaaacaatttataaTTGTTTAAAAGTGTAACAGTGGCA
ATGCTAGTTAGAAAGTTCAAAGAATCATATCTAAAAGCTAAATATTTTAA
ACTCCCTAGAAAATCAAGATATGCCATGTTGTTCGAAATCACTCCCTGTC
AATGCCAATGAAGACTCGAGCGAAGATGAAGCTGATCCCCAGACAGATCA
ACAATCAACAATAAAAGCACCAACAAATGAACAAGAAGCTGAAGCAAAAC
AATGCCCTCGCACATCTAgatcaaaccaatcaaaaggaaagaaaaaaaGT
ATTGTTTTAGAAATCACAGACCCCATTGCAAATTCAAAAACAGCAAAGCA
TTTCCAGGATATTCTTGGAAAAAATGATTTGATCACTCAGTATGCCAAGT
TCAAGAGTATCCTGAAGGCAAAGTTTTCAGAAGAGATGCAAAACAATTTT
AAAGACGTTTGTGCCCAACTTGAGGTTTTGTTAAAGAAGAGGGAAGAAGA
GTTGGCATCTCAGCTTCAGAGTTTGGAAATTTGCTCATTTAAGAAAAACA
CTGGTATTTCAACTGTGCCAAAAGATGAAGAACAAAAACTGAAATACAAT
AGCCTAATGAATAAACTAAAAGTGATCAAATCACTTAAAAGATGTCTtta
aatactttaatcgtagaaatcttagtgagactaattttagcgtacaGCGA
AGCAGCAGGAAAATCTTGgtcttttttggatttattttagcgagtcatga
tttcaaaaaatttcgcgtgtataaattttagcgaacACTCGCGAacttac
attattgactgagttcgttttctagcatttctatgcactgaaacccttcc
tattgataaaaatgtatcaaggcaatataaccag
Run BLAST on NCBI

protein sequence of TCONS_00037350-protein

>TCONS_00037350-protein ID=TCONS_00037350-protein|Name=TCONS_00037350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MPCCSKSLPVNANEDSSEDEADPQTDQQSTIKAPTNEQEAEAKQCPRTSR
SNQSKGKKKSIVLEITDPIANSKTAKHFQDILGKNDLITQYAKFKSILKA
KFSEEMQNNFKDVCAQLEVLLKKREEELASQLQSLEICSFKKNTGISTVP
KDEEQKLKYNSLMNKLKVIKSLKRCL
Run BLAST on NCBI

transcript from alignment at sc0001616:19406..21167-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037350 ID=TCONS_00037350|Name=TCONS_00037350|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at sc0001616:19406..21167- (Clytia hemisphaerica)
CTTTTGCTTACAACGAATTGATTTGAATTTATTATATTTAGACCAAGCAG
TGATGGTCGAACAAGAGACAGCATGCGGTGAACAAGATCAGGATGTAGCT
AGATTAACAACAGACTGCACAACTTCAACTCCCAAGTCTATAAACAAAAA
ATTGGAAGGTAAGTGATCACAGCTTCAAACTGAAATAGCTAACTTACAGA
TTGACGATAATAACTATATAAATAACGAGGAAGAAGAGTTCCAAAGCTTT
TTGAGGATTTTGCCCAAACCCATTTAATCTCTTTCCATAGTCATGTATAA
AAATAGTAATATGAAAAGAAAAGTAATTTAGAAATTAATTTCTTACCACA
TGAATTCCAGTTACTTCAGCAACAACACCAATTACTCCTTTGGCAAGAAT
GGAACTGACATCTAAATATAATGAATATGATACAGGTGAGTTTATTGCTA
ATCTTTTTTTTTCAAAAACAATTTATAATTGTTTAAAAGTGTAACAGTGG
CAATGCTAGTTAGAAAGTTCAAAGAATCATATCTAAAAGCTAAATATTTT
AAACTCCCTAGAAAATCAAGATATGCCATGTTGTTCGAAATCACTCCCTG
TCAATGCCAATGAAGACTCGAGCGAAGGTAGGGAATCACTTGATTATACA
TTAACTTGGTTAATTTTCCCCTCCACTGTCTAGGAGCACTTCACTTGCCT
CTTTCTATCTTTACCTTCCCAAAACAACTTAAATTAATGTACACAACTAT
TTCACATTTTTTATTTAATAGCTGAGATTAAATTTTCCTTTCTATATCTC
AAAAGGATCAGAAACAACTTTAACATAAAATTCTTTGTATAGATGAAGCT
GATCCCCAGACAGATCAACAATCAACAATAAAAGCACCAACAAATGAACA
AGAAGGTGAATATAGCTTTTCTTTCAAGGAAAACTGTTTGAAAGCATGTA
CAAAGTTTCATTTATTTTCTAATCCTAACATTTTTATATTATAGCTGAAG
CAAAACAATGCCCTCGCACATCTAGATCAAACCAATCAAAAGGAAAGAAA
AAAAGTAAGTAATTTAAAGGGTAAATTTGAATCAACCACCAAATTAAGTT
TCCATTAAACTAAATTTTACAAATTATTGAATTCCCAACAAATTTAAATT
ATTGTAATTTTTTCCCTTGTCCACAGGTATTGTTTTAGAAATCACAGACC
CCATTGCAAATTCAAAAACAGCAAAGCATTTCCAGGATATTCTTGGAAAA
AATGATTTGATCACTCAGTATGCCAAGTTCAAGAGTATCCTGAAGGCAAA
GTTTTCAGAAGAGATGCAAAACAATTTTAAAGACGTTTGTGCCCAACTTG
AGGTTTTGTTAAAGAAGAGGGAAGAAGAGTTGGCATCTCAGCTTCAGAGT
TTGGAAATTTGCTCATTTAAGAAAAACACTGGTATTTCAACTGTGCCAAA
AGATGAAGAACAAAAACTGAAATACAATAGCCTAATGAATAAACTAAAAG
TGATCAAATCACTTAAAAGATGTCTTTAAATACTTTAATCGTAGAAATCT
TAGTGAGACTAATTTTAGCGTACAGCGAAGCAGCAGGAAAATCTTGGTCT
TTTTTGGATTTATTTTAGCGAGTCATGATTTCAAAAAATTTCGCGTGTAT
AAATTTTAGCGAACACTCGCGAACTTACATTATTGACTGAGTTCGTTTTC
TAGCATTTCTATGCACTGAAACCCTTCCTATTGATAAAAATGTATCAAGG
CAATATAACCAG

Coding sequence (CDS) from alignment at sc0001616:19406..21167-

>TCONS_00037350 ID=TCONS_00037350|Name=TCONS_00037350|organism=Clytia hemisphaerica|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0001616:19406..21167- (Clytia hemisphaerica)
GTATTGTTTTAGAAATCACAGACCCCATTGCAAATTCAAAAACAGCAAAG
CATTTCCAGGATATTCTTGGAAAAAATGATTTGATCACTCAGTATGCCAA
GTTCAAGAGTATCCTGAAGGCAAAGTTTTCAGAAGAGATGCAAAACAATT
TTAAAGACGTTTGTGCCCAACTTGAGGTTTTGTTAAAGAAGAGGGAAGAA
GAGTTGGCATCTCAGCTTCAGAGTTTGGAAATTTGCTCATTTAAGAAAAA
CACTGGTATTTCAACTGTGCCAAAAGATGAAGAACAAAAACTGAAATACA
ATAGCCTAATGAATAAACTAAAAGTGATCAAATCACTTAAAAGATGTCTT
TAACTGAAGCAAAACAATGCCCTCGCACATCTAGATCAAACCAATCAAAA
GGAAAGAAAAAAAATGAAGCTGATCCCCAGACAGATCAACAATCAACAAT
AAAAGCACCAACAAATGAACAAGAAGATGCCATGTTGTTCGAAATCACTC
CCTGTCAATGCCAATGAAGACTCGAGCGAAGGTATTGTTTTAGAAATCAC
AGACCCCATTGCAAATTCAAAAACAGCAAAGCATTTCCAGGATATTCTTG
GAAAAAATGATTTGATCACTCAGTATGCCAAGTTCAAGAGTATCCTGAAG
GCAAAGTTTTCAGAAGAGATGCAAAACAATTTTAAAGACGTTTGTGCCCA
ACTTGAGGTTTTGTTAAAGAAGAGGGAAGAAGAGTTGGCATCTCAGCTTC
AGAGTTTGGAAATTTGCTCATTTAAGAAAAACACTGGTATTTCAACTGTG
CCAAAAGATGAAGAACAAAAACTGAAATACAATAGCCTAATGAATAAACT
AAAAGTGATCAAATCACTTAAAAGATGTCTTTAACTGAAGCAAAACAATG
CCCTCGCACATCTAGATCAAACCAATCAAAAGGAAAGAAAAAAAATGAAG
CTGATCCCCAGACAGATCAACAATCAACAATAAAAGCACCAACAAATGAA
CAAGAAGATGCCATGTTGTTCGAAATCACTCCCTGTCAATGCCAATGAAG
ACTCGAGCGAAGGTATTGTTTTAGAAATCACAGACCCCATTGCAAATTCA
AAAACAGCAAAGCATTTCCAGGATATTCTTGGAAAAAATGATTTGATCAC
TCAGTATGCCAAGTTCAAGAGTATCCTGAAGGCAAAGTTTTCAGAAGAGA
TGCAAAACAATTTTAAAGACGTTTGTGCCCAACTTGAGGTTTTGTTAAAG
AAGAGGGAAGAAGAGTTGGCATCTCAGCTTCAGAGTTTGGAAATTTGCTC
ATTTAAGAAAAACACTGGTATTTCAACTGTGCCAAAAGATGAAGAACAAA
AACTGAAATACAATAGCCTAATGAATAAACTAAAAGTGATCAAATCACTT
AAAAGATGTCTTTAACTGAAGCAAAACAATGCCCTCGCACATCTAGATCA
AACCAATCAAAAGGAAAGAAAAAAAATGAAGCTGATCCCCAGACAGATCA
ACAATCAACAATAAAAGCACCAACAAATGAACAAGAAGATGCCATGTTGT
TCGAAATCACTCCCTGTCAATGCCAATGAAGACTCGAGCGAAGGTATTGT
TTTAGAAATCACAGACCCCATTGCAAATTCAAAAACAGCAAAGCATTTCC
AGGATATTCTTGGAAAAAATGATTTGATCACTCAGTATGCCAAGTTCAAG
AGTATCCTGAAGGCAAAGTTTTCAGAAGAGATGCAAAACAATTTTAAAGA
CGTTTGTGCCCAACTTGAGGTTTTGTTAAAGAAGAGGGAAGAAGAGTTGG
CATCTCAGCTTCAGAGTTTGGAAATTTGCTCATTTAAGAAAAACACTGGT
ATTTCAACTGTGCCAAAAGATGAAGAACAAAAACTGAAATACAATAGCCT
AATGAATAAACTAAAAGTGATCAAATCACTTAAAAGATGTCTTTAACTGA
AGCAAAACAATGCCCTCGCACATCTAGATCAAACCAATCAAAAGGAAAGA
AAAAAAATGAAGCTGATCCCCAGACAGATCAACAATCAACAATAAAAGCA
CCAACAAATGAACAAGAAGATGCCATGTTGTTCGAAATCACTCCCTGTCA
ATGCCAATGAAGACTCGAGCGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022132XLOC_022132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037350-exon-sc0001616-1575043694:21010..21167TCONS_00037350-exon-sc0001616-1575043694:21010..21167Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1575043694:20541..20807TCONS_00037350-exon-sc0001616-1575043694:20541..20807Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1575043694:20263..20325TCONS_00037350-exon-sc0001616-1575043694:20263..20325Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1575043694:20114..20173TCONS_00037350-exon-sc0001616-1575043694:20114..20173Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1575043694:19406..19991TCONS_00037350-exon-sc0001616-1575043694:19406..19991Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1510915933:21010..21167TCONS_00037350-exon-sc0001616-1510915933:21010..21167Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1510915933:20541..20807TCONS_00037350-exon-sc0001616-1510915933:20541..20807Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1510915933:20263..20325TCONS_00037350-exon-sc0001616-1510915933:20263..20325Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1510915933:20114..20173TCONS_00037350-exon-sc0001616-1510915933:20114..20173Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1510915933:19406..19991TCONS_00037350-exon-sc0001616-1510915933:19406..19991Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1491911889:21010..21167TCONS_00037350-exon-sc0001616-1491911889:21010..21167Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1491911889:20541..20807TCONS_00037350-exon-sc0001616-1491911889:20541..20807Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1491911889:20263..20325TCONS_00037350-exon-sc0001616-1491911889:20263..20325Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1491911889:20114..20173TCONS_00037350-exon-sc0001616-1491911889:20114..20173Clytia hemisphaericaexon
TCONS_00037350-exon-sc0001616-1491911889:19406..19991TCONS_00037350-exon-sc0001616-1491911889:19406..19991Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037350-proteinTCONS_00037350-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001616supercontigsc0001616:19406..21167 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.207952	0.399846	0.217857	0.341709	1.14517	0.832396	1.09914	1.40615	0.760544	0.711766	0.868768	0.464755	0.472708	0.55632	0.268381	0.238986	0.353543	0.35018	0.534161	0.182055	0.28115	0.694461	0.402328	0.22135	0.844264	0.328179	0.541203	0.298448	0.231314	0.318582
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037350 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top