TCONS_00037342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037342
Unique NameTCONS_00037342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037342 ID=TCONS_00037342|Name=TCONS_00037342|organism=Clytia hemisphaerica|type=transcript|length=1381bp
CTAACAGCTAGATTACAGTATAATCTATGTTTTAATATTCTTTCTGTATG
ATTattagaaaaaagatttattcgAGGCTGTTATTATTTTCTATGatatt
tgctttgttttttttaacagAAGTACTAAATAGAAAAAGTATTTAAAATG
TCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACTAC
CAAACCAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGAAGCAGCTC
CAACTGAAACACCTGCTGTTGTTCCTGCTGCAGAAACAGAAACTCCTGCC
GCCCCTGCTGATCCCACCCCAGCTGCTCCAGAGAAACCCGCAGAAACAGA
AACACCTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAAGACAGAAA
GCCCAGCACCTGCTGCTGTAGAATTACCGAAAGTAACACCACAGCCAAGC
ACTCCGGTTGTCCTTACTGAAAATGTTCAGaaaattgtaaGTGAAGAAAA
AGAGGCTGCCACAACCCCAAAGAACAGGACTGACATTCAATCACTACCAA
CGCGCCAATATTTGGACCAATCTGTTGTCCCGATTTTACTACAAGGACTT
ACAGCTTTATCAAAAGAGAGACCAAGCGAACCAATCGACTTTTTGGCAGC
ATATCTCATGAAAAACAAACACATGTTCCAAAAGTGAATCGGACTAACTG
ATGGCTGATTTGCGTGTGTGTGATATGGATaaccaataaaaacaaaagta
ggCGGGAGAGAAGTATGGTTTGGACATTATATTCGATACAACTTGCGTGT
GTGTTTTCAACAATTATGATTCTGATGGATAAAAATATAACTTTACTTTC
GCTTTGAAGAAGTGATGCACAGTTGATTGATGCTTTGATTCTTTTGGTTC
AATTTGGTTGGAGATAATGATATGCAAAACTTTTTAGTTGATAtttattg
cttttttttattttttgttacagTTTTGCTAGATGAAAAAACCCTAAGAG
ACCTTATTtagttgtaatttttttaactgtTCTGCTACACATTGTTTTTA
GAGatatataaaaagaagcaaaagcAAACTTCAGATGTATCATTTAAATT
CCTCTTCAGAACGTTTAAAATTCTTGACCTTTATTTCGGATATTCAAACT
AGGACGAGTCATAAATTGTAACATTATCTTGGtcaaatgacaaaaaaata
tcGTCCGTTCCAGTATCAAAACCCTTAGCAAGTCGTTAAATTGAAATCAG
TTGAAAtcgctttttgatattgaatcaTTTGTAAAATTTAAGATAGTATA
TTCCTTTCGAAACCATAAAACTTTGAGTGTCCTATTGAACTAAATCTGGT
CTTTATGTTACCTTTAAGATTATATTTTCAG
Run BLAST on NCBI

transcript from alignment at sc0001615:5692..8613-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037342 ID=TCONS_00037342|Name=TCONS_00037342|organism=Clytia hemisphaerica|type=transcript|length=2922bp|location=Sequence derived from alignment at sc0001615:5692..8613- (Clytia hemisphaerica)
CTAACAGCTAGATTACAGTATAATCTATGTTTTAATATTCTTTCTGTATG
ATTATTAGAAAAAAGATTTATTCGAGGCTGTTATTATTTTCTATGATATT
TGCTTTGTTTTTTTTAACAGAAGTACTAAATAGAAAAAGTATTTAAAATG
TCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCAGTTGAAGAGACTAC
CAAACCAGGTACTTTTTAAATATTTTAAAGCTATATTATTGCAGTAGGTA
GGTGCTAATTTTTCTTTAATATGCTCTGTATTCTTTATTTCAGTTAAATT
TATTGATAAGGAAATGCATAGGACCATAGGTGAAATTAGGTAGAAATCCT
TTGTTTGAAAAGGTTGCTAGTGGATAGGTTAAAGGAGTAGCAATAATTTG
ATATTTTATATCTTTAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTG
AAGCAGCTCCAACTGAAACACCTGCTGTTGTTCCTGCTGCAGAAACAGAA
ACTCCTGCCGCCCCTGCTGATCCCACCCCAGCTGCTCCAGAGAAACCCGC
AGAAACAGAAACACCTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAA
AGACAGAAAGCCCAGCACCTGCTGCTGTAGAATTACCGAAAGTAACACCT
CAGCCAAGCACTCCNNNNNNNNNNNNNTTAACAGAAGTACTAAATAGAAA
AAGTATTTAAAATGTCAGCAGCAGAGCCAGAACCCATGGAAACAGCACCA
GTTGAAGAGACTACCAAACCAGGTACTTTTTAAATATTTTAAAGCTATAT
GATTGCAGTAGGTAGGTGCCAATTTTTCTTTAATATGCTCTGTATTCTTT
ATTTCAGTTAAATTTATTGATAAGGAAATACATAGGTCCATAGGTGAAAT
TAGGTAGAAATCCTTTGTTTGAAAAGGTTAAAGGAGTAGCAATAATTTGA
TATTTTATATCTTTAGCTGAAGACAAACCCGCAGAACAACCTGCTGCTGA
AGCAGCTCCAACTGAAACACCTGCTGTTGTTCCTGCTGCAGAAACAGAAA
CTCCTGCCGCCCCTGCTGATCCCACCCCAGCTGCTCCAGAGAAACCCGCA
GAAACAGAAACACCTGCCGAAACACCTGCTGCAGCTCCTGCCCCAGAAAA
GACAGAAAGCCCAGCACCTGCTGCTGTAGAATTACCGAAAGTAACACCAC
AGCCAAGCACTCCGGTTGTCCTTACTGAAAATGTTCAGGTAGCAAACGTA
TTTTTCATTTTTCTCGTTTATTTTTACTTTCACTTGAAGTGGACTTTCGT
GAAAGAATACCAATTTTAAAACCAAATTTGGTCTGAATTCTTTATGCTAC
TAAAACAACTTAGATATAGGCCAGACAACAAAATGAAAACCATACATACA
CTGACTGACATCATCCTTGTTAATGTTTTTTAGAAAATTGTAAGTGAAGA
AAAAGAGGCTGCCACAACCCCAAAGAACAGGACTGACATTCAATCACTAC
CAACGCGCCAATATTTGGACCAATCTGTTGTCCCGATTTTACTACAAGGA
CTTACAGCTTTATCAAAAGAGAGGTAGATATTCCGAATTATTCAGTTAAA
AAAACTGAATCACATTTTGCCATAATTGTTTTCAGAGTATTTCAATGACA
ACACTGCATATTGCCCTTCAATTTGAAGAAACAATTCGTTTCAGAAAGGA
TGAATTTTGCAAATGATGGCTAGAATTACCCTCTGAGTCTAATAATTTCA
CTTATTTTTAAGCTTAAAAAGTCTTTTAGGAAGTTTCTCTTGCAAATAAG
ACACTTTTCCTCTATGCCTTCCCCTTAGCAGTTGTTCAAATTTTTATTTT
AGCTAGTTTCAAAGCATAGCTTTCTTCCCATCCGAAAATACCAAGACTCT
GGTGTGTAAAATTAGTTTTTCGTTTGCAATAAAACTGATAGACTGATAAA
AAAAATCAACTTGGAAAATTTTATAAAATGTATTTTTTTGCAGACCAAGC
GAACCAATCGACTTTTTGGCAGCATATCTCATGAAAAACAAACACATGTT
CCAAAAGTGAATCGGACTAACTGGTATGATTATTTAAATACTGCAGTCCT
ATGAAAAATCACTCACAATGACTTAAAAAATTGCTTGGTAATGATCGAAA
GTTGCGGTGGCAAAATATGACTATTGAATTTTCTTCGTTCGAAAAAGCAC
ACACTCTTTGTGTATAGATTGCAAACATTGTATATATTTAGATGGCTGAT
TTGCGTGTGTGTGATATGGATAACCAATAAAAACAAAAGTAGGCGGGAGA
GAAGTATGGTTTGGACATTATATTCGATACAACTTGCGTGTGTGTTTTCA
ACAATTATGATTCTGATGGATAAAAATATAACTTTACTTTCGCTTTGAAG
AAGTGATGCACAGTTGATTGATGCTTTGATTCTTTTGGTTCAATTTGGTT
GGAGATAATGATATGCAAAACTTTTTAGTTGATATTTATTGCTTTTTTTT
ATTTTTTGTTACAGTTTTGCTAGATGAAAAAACCCTAAGAGACCTTATTT
AGTTGTAATTTTTTTAACTGTTCTGCTACACATTGTTTTTAGAGATATAT
AAAAAGAAGCAAAAGCAAACTTCAGATGTATCATTTAAATTCCTCTTCAG
AACGTTTAAAATTCTTGACCTTTATTTCGGATATTCAAACTAGGACGAGT
CATAAATTGTAACATTATCTTGGTCAAATGACAAAAAAATATCGTCCGTT
CCAGTATCAAAACCCTTAGCAAGTCGTTAAATTGAAATCAGTTGAAATCG
CTTTTTGATATTGAATCATTTGTAAAATTTAAGATAGTATATTCCTTTCG
AAACCATAAAACTTTGAGTGTCCTATTGAACTAAATCTGGTCTTTATGTT
ACCTTTAAGATTATATTTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022125XLOC_022125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037342-exon-sc0001615-1575043694:8406..8613TCONS_00037342-exon-sc0001615-1575043694:8406..8613Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1575043694:7376..7647TCONS_00037342-exon-sc0001615-1575043694:7376..7647Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1575043694:7041..7180TCONS_00037342-exon-sc0001615-1575043694:7041..7180Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1575043694:6541..6620TCONS_00037342-exon-sc0001615-1575043694:6541..6620Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1575043694:5692..6372TCONS_00037342-exon-sc0001615-1575043694:5692..6372Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1510915933:8406..8613TCONS_00037342-exon-sc0001615-1510915933:8406..8613Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1510915933:7376..7647TCONS_00037342-exon-sc0001615-1510915933:7376..7647Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1510915933:7041..7180TCONS_00037342-exon-sc0001615-1510915933:7041..7180Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1510915933:6541..6620TCONS_00037342-exon-sc0001615-1510915933:6541..6620Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1510915933:5692..6372TCONS_00037342-exon-sc0001615-1510915933:5692..6372Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1491911889:8406..8613TCONS_00037342-exon-sc0001615-1491911889:8406..8613Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1491911889:7376..7647TCONS_00037342-exon-sc0001615-1491911889:7376..7647Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1491911889:7041..7180TCONS_00037342-exon-sc0001615-1491911889:7041..7180Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1491911889:6541..6620TCONS_00037342-exon-sc0001615-1491911889:6541..6620Clytia hemisphaericaexon
TCONS_00037342-exon-sc0001615-1491911889:5692..6372TCONS_00037342-exon-sc0001615-1491911889:5692..6372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001615supercontigsc0001615:5692..8613 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
87.6139	78.16	147.304	169.823	24.8178	22.0977	23.0782	26.7669	27.6749	35.2627	25.481	27.2696	32.8104	38.4879	22.1232	30.7746	117.56	98.2985	26.8203	22.2771	67.9035	77.4976	78.9251	73.6788	59.2689	47.4584	26.6823	21.3487	35.3794	38.9035
Blast
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BLAST of TCONS_00037342 vs. Swiss-Prot (Human)
Match: DPY30 (Protein dpy-30 homolog OS=Homo sapiens GN=DPY30 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 3.655e-24
Identity = 48/85 (56.47%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:  430 KVTPQPSTPVVLTENVQKIVSEEK-EAATTPKNRTDIQSLPTRQYLDQSVVPILLQGLTALSKERPSEPIDFLAAYLMKNKHMFQ 681
            +V   P +   LT+NV++IV  EK  A  + K + D+QSLPTR YLDQ+VVPILLQGL  L+KERP  PI+FLA+YL+KNK  F+
Sbjct:   12 QVAENPHSEYGLTDNVERIVENEKINAEKSSKQKVDLQSLPTRAYLDQTVVPILLQGLAVLAKERPPNPIEFLASYLLKNKAQFE 96
The following BLAST results are available for this feature:
BLAST of TCONS_00037342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPY303.655e-2456.47Protein dpy-30 homolog OS=Homo sapiens GN=DPY30 PE... [more]
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