TCONS_00037340 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037340
Unique NameTCONS_00037340
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length281

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037340 ID=TCONS_00037340|Name=TCONS_00037340|organism=Clytia hemisphaerica|type=transcript|length=281bp
tttggagaaaataaattGGCAGCTCTGGATAAACATAGCCAAGTAACCGA
TTTCTTTACTTTTTACTGTACTTTTACTCTTAACTTAACTTTTACTATTT
CTTGTATTTACTTTTTGTTAAGTTATttttttcggtagccggtaattttc
ATCTCCCCAACTCTCGGTTAGAATAGTTTCCacactttattttttaactg
tTTATATTATTATAGTTAATCGTTTCGTTCCATAAAAAATTACATGTATT
TTAGTTCCCTGAGAAAAATTATCTACTTCCT
Run BLAST on NCBI

transcript from alignment at sc0001614:36331..36611

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037340 ID=TCONS_00037340|Name=TCONS_00037340|organism=Clytia hemisphaerica|type=transcript|length=281bp|location=Sequence derived from alignment at sc0001614:36331..36611 (Clytia hemisphaerica)
AGGAAGTAGATAATTTTTCTCAGGGAACTAAAATACATGTAATTTTTTAT
GGAACGAAACGATTAACTATAATAATATAAacagttaaaaaataaagtgt
GGAAACTATTCTAACCGAGAGTTGGGGAGATgaaaattaccggctaccga
aaaaaATAACTTAACAAAAAGTAAATACAAGAAATAGTAAAAGTTAAGTT
AAGAGTAAAAGTACAGTAAAAAGTAAAGAAATCGGTTACTTGGCTATGTT
TATCCAGAGCTGCCaatttattttctccaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022124XLOC_022124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037340-exon-sc0001614-1491911889:36331..36611TCONS_00037340-exon-sc0001614-1491911889:36331..36611Clytia hemisphaericaexon
TCONS_00037340-exon-sc0001614-1510915933:36331..36611TCONS_00037340-exon-sc0001614-1510915933:36331..36611Clytia hemisphaericaexon
TCONS_00037340-exon-sc0001614-1575043694:36331..36611TCONS_00037340-exon-sc0001614-1575043694:36331..36611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001614supercontigsc0001614:36331..36611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.41578	1.90338	0.552502	0	5.26442	1.56001	0	1.17465	2.05601	0	1.48313	0.974952	0	2.02218	3.6021	2.97354	4.39579	2.62823	0.518721	0	2.83077	4.83263	2.79747	2.54331	0	0	2.0073	0	2.16643	1.10362
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037340 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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