|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037336 ID=TCONS_00037336|Name=TCONS_00037336|organism=Clytia hemisphaerica|type=transcript|length=858bp
AAAAGACAACcaaagaaaaatggaaagaaatCCAAATTATAAGGCTGACG
CTGCCAAAAACAGCAGAAAAGACACGAAACTGACCAATCGCATCAAGGCT
TTAAAGAAATTGAATGTCGACAAGGAGGCAAAGAAGGCAATTTCTGCCAT
CTTGATTCGCCCACTTATGTCTTCTGATGAGGAAGAAATTGATGGTCAGA
CTAAGACATTTATTGTACGTAAACCTAGATGGAGGACTGATGGCATCACA
AGTTGTTTTAAAACTCTTGACGGTACTTACCAGAACAATCAATCTAAACA
TTCCCTCTTCCGTCTTATGAAGAGAATAGATGGTCCCCCCTCTGAAAGAG
AAGAGCCAGAATGGTCTGAGCGCATGAGGACAGCTATACAATTCTTTGAC
TAATACACAAATTTTCTATAAGTAGATTCATGTAAAAAAGTAATGGATAA
ACCTAAATTTTTTTCTAAATGAGGATGAGGTAATATTTGTATATTTATAT
ACACGTGTCAGAGCTTGACTCTAAGTTTTTAAATCTGCTAATAATGGACC
ATTGCAATGTCTTCCACGGACTCGCCAGCTTATTGGCTGCAAtgatgtat
tgactgattttatgtcacatacaaccaatcagctgtcttGTCCGTGATAt
cagaagacattacaatggtctgcaatggtgcatatcatgagtTTAAACCT
TGATGTGGGGGATgttttcctttttaaacttgTCTCGGTAGCTATGTTGT
TTTACAAGGTTATACACTGtttgaaagataatttttaggaaaaaaatgaa
gatttttctacttggtcaaaaatatcaatttgatgctttaaagatatttg
aaCTCAGA Run BLAST on NCBI protein sequence of TCONS_00037336-protein >TCONS_00037336-protein ID=TCONS_00037336-protein|Name=TCONS_00037336-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
KDNQRKMERNPNYKADAAKNSRKDTKLTNRIKALKKLNVDKEAKKAISAI
LIRPLMSSDEEEIDGQTKTFIVRKPRWRTDGITSCFKTLDGTYQNNQSKH
SLFRLMKRIDGPPSEREEPEWSERMRTAIQFFD Run BLAST on NCBI transcript from alignment at sc0001614:37132..38357- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037336 ID=TCONS_00037336|Name=TCONS_00037336|organism=Clytia hemisphaerica|type=transcript|length=1226bp|location=Sequence derived from alignment at sc0001614:37132..38357- (Clytia hemisphaerica)
AAAAGACAACCAAAGAAAAATGGAAAGAAATCCAAATTATAAGGCTGACG
CTGCCAAAAACAGCAGAAAAGACACGGTAAGCAAGAAGCTTTCAAGCCTT
TTATCTAAAAATAGCTTAAATTTAAGGAAAATGATTGTTTTTAAGACAAG
GTTGTCATAATAGTGCTCAAGCAGCCAGTAGTGAAAATAGTCCAGTACAA
CTTTTGAGATGGTACCATAGCAAAGGGCACTTTAGTCACTTGCTTGCCGG
TAACTTGCATGAATTTGAAACAGCAAACCTTTCTCATCTTCAATCTGCTT
CAATTAAGAAAAGTCTTTTTTATATACTTTCTAATGATTGCATTGTAGCA
CAAAACTTTCAGTAATGTATTTTACAAGATGATTTTTGAAATATAACTTT
ATACTGCTTTCTGCTGCTTTATATATAATATTTTATGCTTTCAGAAACTG
ACCAATCGCATCAAGGCTTTAAAGAAATTGAATGTCGACAAGGAGGCAAA
GAAGGCAATTTCTGCCATCTTGATTCGCCCACTTATGTCTTCTGATGAGG
AAGAAATTGATGGTCAGACTAAGACATTTATTGTACGTAAACCTAGATGG
AGGACTGATGGCATCACAAGTTGTTTTAAAACTCTTGACGGTACTTACCA
GAACAATCAATCTAAACATTCCCTCTTCCGTCTTATGAAGAGAATAGATG
GTCCCCCCTCTGAAAGAGAAGAGCCAGAATGGTCTGAGCGCATGAGGACA
GCTATACAATTCTTTGACTAATACACAAATTTTCTATAAGTAGATTCATG
TAAAAAAGTAATGGATAAACCTAAATTTTTTTCTAAATGAGGATGAGGTA
ATATTTGTATATTTATATACACGTGTCAGAGCTTGACTCTAAGTTTTTAA
ATCTGCTAATAATGGACCATTGCAATGTCTTCCACGGACTCGCCAGCTTA
TTGGCTGCAATGATGTATTGACTGATTTTATGTCACATACAACCAATCAG
CTGTCTTGTCCGTGATATCAGAAGACATTACAATGGTCTGCAATGGTGCA
TATCATGAGTTTAAACCTTGATGTGGGGGATGTTTTCCTTTTTAAACTTG
TCTCGGTAGCTATGTTGTTTTACAAGGTTATACACTGTTTGAAAGATAAT
TTTTAGGAAAAAAATGAAGATTTTTCTACTTGGTCAAAAATATCAATTTG
ATGCTTTAAAGATATTTGAACTCAGA Coding sequence (CDS) from alignment at sc0001614:37132..38357- >TCONS_00037336 ID=TCONS_00037336|Name=TCONS_00037336|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at sc0001614:37132..38357- (Clytia hemisphaerica)
AAACTGACCAATCGCATCAAGGCTTTAAAGAAATTGAATGTCGACAAGGA
GGCAAAGAAGGCAATTTCTGCCATCTTGATTCGCCCACTTATGTCTTCTG
ATGAGGAAGAAATTGATGGTCAGACTAAGACATTTATTGTACGTAAACCT
AGATGGAGGACTGATGGCATCACAAGTTGTTTTAAAACTCTTGACGGTAC
TTACCAGAACAATCAATCTAAACATTCCCTCTTCCGTCTTATGAAGAGAA
TAGATGGTCCCCCCTCTGAAAGAGAAGAGCCAGAATGGTCTGAGCGCATG
AGGACAGCTATACAATTCTTTGACTAAAAAGACAACCAAAGAAAAATGGA
AAGAAATCCAAATTATAAGGCTGACGCTGCCAAAAACAGCAGAAAAGACA
CGAAACTGACCAATCGCATCAAGGCTTTAAAGAAATTGAATGTCGACAAG
GAGGCAAAGAAGGCAATTTCTGCCATCTTGATTCGCCCACTTATGTCTTC
TGATGAGGAAGAAATTGATGGTCAGACTAAGACATTTATTGTACGTAAAC
CTAGATGGAGGACTGATGGCATCACAAGTTGTTTTAAAACTCTTGACGGT
ACTTACCAGAACAATCAATCTAAACATTCCCTCTTCCGTCTTATGAAGAG
AATAGATGGTCCCCCCTCTGAAAGAGAAGAGCCAGAATGGTCTGAGCGCA
TGAGGACAGCTATACAATTCTTTGACTAAAAAGACAACCAAAGAAAAATG
GAAAGAAATCCAAATTATAAGGCTGACGCTGCCAAAAACAGCAGAAAAGA
CACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037336-exon-sc0001614-1575043694:38282..38357 | TCONS_00037336-exon-sc0001614-1575043694:38282..38357 | Clytia hemisphaerica | exon |
| TCONS_00037336-exon-sc0001614-1575043694:37132..37913 | TCONS_00037336-exon-sc0001614-1575043694:37132..37913 | Clytia hemisphaerica | exon |
| TCONS_00037336-exon-sc0001614-1510915933:38282..38357 | TCONS_00037336-exon-sc0001614-1510915933:38282..38357 | Clytia hemisphaerica | exon |
| TCONS_00037336-exon-sc0001614-1510915933:37132..37913 | TCONS_00037336-exon-sc0001614-1510915933:37132..37913 | Clytia hemisphaerica | exon |
| TCONS_00037336-exon-sc0001614-1491911889:38282..38357 | TCONS_00037336-exon-sc0001614-1491911889:38282..38357 | Clytia hemisphaerica | exon |
| TCONS_00037336-exon-sc0001614-1491911889:37132..37913 | TCONS_00037336-exon-sc0001614-1491911889:37132..37913 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001614 | supercontig | sc0001614:37132..38357 - |
Blast
The following BLAST results are available for this feature:
|
