TCONS_00037332 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037332
Unique NameTCONS_00037332
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length880

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037332 ID=TCONS_00037332|Name=TCONS_00037332|organism=Clytia hemisphaerica|type=transcript|length=880bp
GCTCAGCCACCAAACAATATAATGGTTAGAGTTAATCAGTTGGAACAGCG
CTTGAGAGCTTTTGAAGAGCAGAACAGAAGAAGGGAAGACAGGATGGTTA
CTGTCAGACCTACAACCAGGGAATATGTTAGAGTATGTACCAGAACCTTG
ATAAATGATCCTTCAAATGATCTGGATTGGGATTTCAACTTTagAGTTAA
CACTGGGCCAAATCATGCAACAACAGAAAAGATAAAACAAAATGTGATGG
CACTTGATCGAACAATCACAGAAATTGAATTTAGAGTGGCTGTCAAAACC
TATTTCAATTCATCTAAATCATATAAATCCAGGAGATCTGAACAGTTTCT
AATCGATACTGCaaaaaatggacgaaaaaaaacgAAACTGGTCAACCGAA
AGAAAGCTCTCAAAAGGTCGACAACCATTCCAGATGTAGATAAATTGGTA
ATTAAAGAAGCACTGAGTCTGGAATTCATGTCTTCAGAAGAAGAGAGAGA
GGATGATGAAGATCTCCAACATTTCGAAATAAGGCCTCTTCGATGGAGGA
CAAGAAGGTGTGATAAATATTTTGAGGCGTTAGATAAAAGACACTGGCAA
AGACTGTCAAAAAAGTCACAAAGGATGACTGTCCAAAGGAAAATGGGCCC
CTACAGTTGCAGAGGGCCACCTAATGTTACTGATGCAAATAGTTGGGCAA
TCAGTACGAACTGATTATGTAAAGGACGATGAAATTACATTTATATTATT
GTTGGAATTTGTTCAACGTTTTTTTGTTAGAACAAGGTAACCTTTGGAAT
GATATTAAATAGGTAAACCTTCTCATAATGATGGAAAGGAAACTCCATTA
ATGTATTTTTAAGCTAGTGTCTTGTGTTGG
Run BLAST on NCBI

protein sequence of TCONS_00037332-protein

>TCONS_00037332-protein ID=TCONS_00037332-protein|Name=TCONS_00037332-protein|organism=Clytia hemisphaerica|type=polypeptide|length=237bp
AQPPNNIMVRVNQLEQRLRAFEEQNRRREDRMVTVRPTTREYVRVCTRTL
INDPSNDLDWDFNFRVNTGPNHATTEKIKQNVMALDRTITEIEFRVAVKT
YFNSSKSYKSRRSEQFLIDTAKNGRKKTKLVNRKKALKRSTTIPDVDKLV
IKEALSLEFMSSEEEREDDEDLQHFEIRPLRWRTRRCDKYFEALDKRHWQ
RLSKKSQRMTVQRKMGPYSCRGPPNVTDANSWAISTN
Run BLAST on NCBI

transcript from alignment at sc0001614:1208..3271-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037332 ID=TCONS_00037332|Name=TCONS_00037332|organism=Clytia hemisphaerica|type=transcript|length=2064bp|location=Sequence derived from alignment at sc0001614:1208..3271- (Clytia hemisphaerica)
GCTCAGCCACCAAACAATATAATGGTTAGAGTTAATCAGTTGGAACAGCG
CTTGAGAGCTTTTGAAGAGCAGAACAGAAGAAGGGAAGACAGGATGGTTA
CTGTCAGACCTACAACCAGGGTAATAATGAGTTTCCTATACTGCTTCTAG
CCATTATCATGTGTGTAATTGTCAGTTGTGCACAAATTACTAGAATCTGA
TTGGTTTAGAGTAGTCCAATTGTTGTGTAATTAACAATTTATCACTCGTA
ATAAGGGAAGAGTTACCATAATCTGCACAAGTTCTTTCTTCTTTGTTAAT
CTTGATTAATCATTAAATTTAGCATTTCGCTAATTGATTGTTTGATACTT
GATTATATCAGTTTTATAACTAGTCTATTGAGGAATCAAAACCATTTACA
TACCATTCAATAAAAAATATATATTGTTTATTTTAAATATATTTTCCTTT
TATTTAGGAATATGTTAGAGTATGTACCAGAACCTTGATAAATGATCCTT
CAAATGATCTGGATTGGGATTTCAACTTTAGGTATTTTATTTCTTTTAAA
TGTTTCTCTCAGTCTTTTATTAAAACATCCACTCATTTCCAAATCAAATC
AACTTCCAACTATTATTGAATGAAAATTAACATATATTTTATAGAGTTAA
CACTGGGCCAAATCATGCAACAACAGAAAAGATAAAACAAAATGTGATGG
CACTTGATCGAACAATCACAGAAATTGAATTTAGAGGTATAATATTGTTT
TCTTTTTGCACAAACAACTAATGCAAAAGTCACTTCATTCCAGCCAACTT
TGTTTATTTTCTGTCAAAAAATCACCCACTTCCCCCATTAACAGCCTCCC
TATTTTGTATCTATAACCATGAACATCAAAAGAATTCTTTTCTTTTTTCT
TAAAAGAGTTGGTTTTTCAAAACAATAGGGTAAAAGTTTTTCAAAGCTTT
TGCCTTCACAAAGTTAGTCCCTTCCATCCTAGTGCCAACCACCCCCGCGA
ACTGTACTTTACGGAATAAACTAAACTGCAAACCTTAGCCACTAGCCGTC
AAAGAGTATTGTAATACTTTGAATACCAACTGGGAATGTTGAAACTTTTT
TTCGATTATAAGATAATTTATATATTTTTTATATAAATGTGCAATGATAA
TGCAATTACAATAGAAATGACTAGACTTTTATTGTTTGTTCTAATTTTAG
TGGCTGTCAAAACCTATTTCAATTCATCTAAATCATATAAATCCAGGAGA
TCTGAACAGTTTCTAATCGATACTGCAAAAAATGGACGAAAAAAAACGGT
AAGGAAATTAATTACCTTGAAGAATTAATTCTGAAATTGCACAATTTTTC
ATAATATACAAAATAAATTCCTTTTGGAGGTTAGCTAATAATATTATTTG
AGATATTTTTTTCACAACCACAATTGTTTAAACTAAAACTTTGAAAAAAA
ATTGTTTTCTATACAATGACCTGGGCGAATCAAAATTTCCATTAAAACTG
AAACAGGTATTTCTTGAGCAATGCACTTGGTGTTTGCAATCGGATAATGG
TATATTTCCTTTCACTAGAAACTGGTCAACCGAAAGAAAGCTCTCAAAAG
GTCGACAACCATTCCAGATGTAGATAAATTGGTAATTAAAGAAGCACTGA
GTCTGGAATTCATGTCTTCAGAAGAAGAGAGAGAGGATGATGAAGATCTC
CAACATTTCGAAATAAGGCCTCTTCGATGGAGGACAAGAAGGTGTGATAA
ATATTTTGAGGCGTTAGATAAAAGACACTGGCAAAGACTGTCAAAAAAGT
CACAAAGGATGACTGTCCAAAGGAAAATGGGCCCCTACAGTTGCAGAGGG
CCACCTAATGTTACTGATGCAAATAGTTGGGCAATCAGTACGAACTGATT
ATGTAAAGGACGATGAAATTACATTTATATTATTGTTGGAATTTGTTCAA
CGTTTTTTTGTTAGAACAAGGTAACCTTTGGAATGATATTAAATAGGTAA
ACCTTCTCATAATGATGGAAAGGAAACTCCATTAATGTATTTTTAAGCTA
GTGTCTTGTGTTGG

Coding sequence (CDS) from alignment at sc0001614:1208..3271-

>TCONS_00037332 ID=TCONS_00037332|Name=TCONS_00037332|organism=Clytia hemisphaerica|type=CDS|length=3570bp|location=Sequence derived from alignment at sc0001614:1208..3271- (Clytia hemisphaerica)
AAACTGGTCAACCGAAAGAAAGCTCTCAAAAGGTCGACAACCATTCCAGA
TGTAGATAAATTGGTAATTAAAGAAGCACTGAGTCTGGAATTCATGTCTT
CAGAAGAAGAGAGAGAGGATGATGAAGATCTCCAACATTTCGAAATAAGG
CCTCTTCGATGGAGGACAAGAAGGTGTGATAAATATTTTGAGGCGTTAGA
TAAAAGACACTGGCAAAGACTGTCAAAAAAGTCACAAAGGATGACTGTCC
AAAGGAAAATGGGCCCCTACAGTTGCAGAGGGCCACCTAATGTTACTGAT
GCAAATAGTTGGGCAATCAGTACGAACTGATGGCTGTCAAAACCTATTTC
AATTCATCTAAATCATATAAATCCAGGAGATCTGAACAGTTTCTAATCGA
TACTGCAAAAAATGGACGAAAAAAAACGAGTTAACACTGGGCCAAATCAT
GCAACAACAGAAAAGATAAAACAAAATGTGATGGCACTTGATCGAACAAT
CACAGAAATTGAATTTAGAGGAATATGTTAGAGTATGTACCAGAACCTTG
ATAAATGATCCTTCAAATGATCTGGATTGGGATTTCAACTTTAGGCTCAG
CCACCAAACAATATAATGGTTAGAGTTAATCAGTTGGAACAGCGCTTGAG
AGCTTTTGAAGAGCAGAACAGAAGAAGGGAAGACAGGATGGTTACTGTCA
GACCTACAACCAGGAAACTGGTCAACCGAAAGAAAGCTCTCAAAAGGTCG
ACAACCATTCCAGATGTAGATAAATTGGTAATTAAAGAAGCACTGAGTCT
GGAATTCATGTCTTCAGAAGAAGAGAGAGAGGATGATGAAGATCTCCAAC
ATTTCGAAATAAGGCCTCTTCGATGGAGGACAAGAAGGTGTGATAAATAT
TTTGAGGCGTTAGATAAAAGACACTGGCAAAGACTGTCAAAAAAGTCACA
AAGGATGACTGTCCAAAGGAAAATGGGCCCCTACAGTTGCAGAGGGCCAC
CTAATGTTACTGATGCAAATAGTTGGGCAATCAGTACGAACTGATGGCTG
TCAAAACCTATTTCAATTCATCTAAATCATATAAATCCAGGAGATCTGAA
CAGTTTCTAATCGATACTGCAAAAAATGGACGAAAAAAAACGAGTTAACA
CTGGGCCAAATCATGCAACAACAGAAAAGATAAAACAAAATGTGATGGCA
CTTGATCGAACAATCACAGAAATTGAATTTAGAGGAATATGTTAGAGTAT
GTACCAGAACCTTGATAAATGATCCTTCAAATGATCTGGATTGGGATTTC
AACTTTAGGCTCAGCCACCAAACAATATAATGGTTAGAGTTAATCAGTTG
GAACAGCGCTTGAGAGCTTTTGAAGAGCAGAACAGAAGAAGGGAAGACAG
GATGGTTACTGTCAGACCTACAACCAGGAAACTGGTCAACCGAAAGAAAG
CTCTCAAAAGGTCGACAACCATTCCAGATGTAGATAAATTGGTAATTAAA
GAAGCACTGAGTCTGGAATTCATGTCTTCAGAAGAAGAGAGAGAGGATGA
TGAAGATCTCCAACATTTCGAAATAAGGCCTCTTCGATGGAGGACAAGAA
GGTGTGATAAATATTTTGAGGCGTTAGATAAAAGACACTGGCAAAGACTG
TCAAAAAAGTCACAAAGGATGACTGTCCAAAGGAAAATGGGCCCCTACAG
TTGCAGAGGGCCACCTAATGTTACTGATGCAAATAGTTGGGCAATCAGTA
CGAACTGATGGCTGTCAAAACCTATTTCAATTCATCTAAATCATATAAAT
CCAGGAGATCTGAACAGTTTCTAATCGATACTGCAAAAAATGGACGAAAA
AAAACGAGTTAACACTGGGCCAAATCATGCAACAACAGAAAAGATAAAAC
AAAATGTGATGGCACTTGATCGAACAATCACAGAAATTGAATTTAGAGGA
ATATGTTAGAGTATGTACCAGAACCTTGATAAATGATCCTTCAAATGATC
TGGATTGGGATTTCAACTTTAGGCTCAGCCACCAAACAATATAATGGTTA
GAGTTAATCAGTTGGAACAGCGCTTGAGAGCTTTTGAAGAGCAGAACAGA
AGAAGGGAAGACAGGATGGTTACTGTCAGACCTACAACCAGGAAACTGGT
CAACCGAAAGAAAGCTCTCAAAAGGTCGACAACCATTCCAGATGTAGATA
AATTGGTAATTAAAGAAGCACTGAGTCTGGAATTCATGTCTTCAGAAGAA
GAGAGAGAGGATGATGAAGATCTCCAACATTTCGAAATAAGGCCTCTTCG
ATGGAGGACAAGAAGGTGTGATAAATATTTTGAGGCGTTAGATAAAAGAC
ACTGGCAAAGACTGTCAAAAAAGTCACAAAGGATGACTGTCCAAAGGAAA
ATGGGCCCCTACAGTTGCAGAGGGCCACCTAATGTTACTGATGCAAATAG
TTGGGCAATCAGTACGAACTGATGGCTGTCAAAACCTATTTCAATTCATC
TAAATCATATAAATCCAGGAGATCTGAACAGTTTCTAATCGATACTGCAA
AAAATGGACGAAAAAAAACGAGTTAACACTGGGCCAAATCATGCAACAAC
AGAAAAGATAAAACAAAATGTGATGGCACTTGATCGAACAATCACAGAAA
TTGAATTTAGAGGAATATGTTAGAGTATGTACCAGAACCTTGATAAATGA
TCCTTCAAATGATCTGGATTGGGATTTCAACTTTAGGCTCAGCCACCAAA
CAATATAATGGTTAGAGTTAATCAGTTGGAACAGCGCTTGAGAGCTTTTG
AAGAGCAGAACAGAAGAAGGGAAGACAGGATGGTTACTGTCAGACCTACA
ACCAGGAAACTGGTCAACCGAAAGAAAGCTCTCAAAAGGTCGACAACCAT
TCCAGATGTAGATAAATTGGTAATTAAAGAAGCACTGAGTCTGGAATTCA
TGTCTTCAGAAGAAGAGAGAGAGGATGATGAAGATCTCCAACATTTCGAA
ATAAGGCCTCTTCGATGGAGGACAAGAAGGTGTGATAAATATTTTGAGGC
GTTAGATAAAAGACACTGGCAAAGACTGTCAAAAAAGTCACAAAGGATGA
CTGTCCAAAGGAAAATGGGCCCCTACAGTTGCAGAGGGCCACCTAATGTT
ACTGATGCAAATAGTTGGGCAATCAGTACGAACTGATGGCTGTCAAAACC
TATTTCAATTCATCTAAATCATATAAATCCAGGAGATCTGAACAGTTTCT
AATCGATACTGCAAAAAATGGACGAAAAAAAACGAGTTAACACTGGGCCA
AATCATGCAACAACAGAAAAGATAAAACAAAATGTGATGGCACTTGATCG
AACAATCACAGAAATTGAATTTAGAGGAATATGTTAGAGTATGTACCAGA
ACCTTGATAAATGATCCTTCAAATGATCTGGATTGGGATTTCAACTTTAG
GCTCAGCCACCAAACAATATAATGGTTAGAGTTAATCAGTTGGAACAGCG
CTTGAGAGCTTTTGAAGAGCAGAACAGAAGAAGGGAAGACAGGATGGTTA
CTGTCAGACCTACAACCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022117XLOC_022117Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037332-proteinTCONS_00037332-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037332-exon-sc0001614-1575043694:3152..3271TCONS_00037332-exon-sc0001614-1575043694:3152..3271Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1575043694:2741..2814TCONS_00037332-exon-sc0001614-1575043694:2741..2814Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1575043694:2536..2627TCONS_00037332-exon-sc0001614-1575043694:2536..2627Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1575043694:1974..2071TCONS_00037332-exon-sc0001614-1575043694:1974..2071Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1575043694:1208..1703TCONS_00037332-exon-sc0001614-1575043694:1208..1703Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1510915933:3152..3271TCONS_00037332-exon-sc0001614-1510915933:3152..3271Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1510915933:2741..2814TCONS_00037332-exon-sc0001614-1510915933:2741..2814Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1510915933:2536..2627TCONS_00037332-exon-sc0001614-1510915933:2536..2627Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1510915933:1974..2071TCONS_00037332-exon-sc0001614-1510915933:1974..2071Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1510915933:1208..1703TCONS_00037332-exon-sc0001614-1510915933:1208..1703Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1491911889:3152..3271TCONS_00037332-exon-sc0001614-1491911889:3152..3271Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1491911889:2741..2814TCONS_00037332-exon-sc0001614-1491911889:2741..2814Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1491911889:2536..2627TCONS_00037332-exon-sc0001614-1491911889:2536..2627Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1491911889:1974..2071TCONS_00037332-exon-sc0001614-1491911889:1974..2071Clytia hemisphaericaexon
TCONS_00037332-exon-sc0001614-1491911889:1208..1703TCONS_00037332-exon-sc0001614-1491911889:1208..1703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001614supercontigsc0001614:1208..3271 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.105746	0.0515594	0	0	0	0.0563439	0	0.254555	0.222775	0.38632	0.0535674	0.176065	0.281313	0.182591	0.780598	0.418851	0.674756	0.81365	0.168615	0.117629	0.204482	0.299218	0.363738	0.165346	0	0.202654	0	0	0.234739	0.179372
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037332 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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