TCONS_00037331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037331
Unique NameTCONS_00037331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1118

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037331 ID=TCONS_00037331|Name=TCONS_00037331|organism=Clytia hemisphaerica|type=transcript|length=1118bp
TAACAATCTAAACGATCAGGGTCATGTTACTTctgaaaattctcaaaatg
aTGATATAGACATTGAAGCCATTGAAAATATCGATGAAGAGATATTGGAA
ATGATTAGTCGACGTTATCAGAATGGAGATGGACCTGATGAAACGTTTGT
GGACGAAACGTTTGTAAATGAAACTTTAAATTAGTCATTTTTAAATGTTA
CAGATCCAGTAAATTTATGTGAACATTCAGCAATTGTGACATGGATTTGC
CTTTTGCAATAGAGCTTCAATATAACAGACAATGCTTTTGAATACATATT
GAAATTTATCTATGGATTATTAACTATCTTGGTTAGTCAATTTAATTTAG
ATTCAGCAGTGTTAATCGGATTTCCAAGCAGTTTGTATCTTTTCCATAAG
TTTGTCAATAAAAAAGAATGCTTCAAGAAGTATGTTGTGTGTCTAAAATG
TCATATGCTCTATAAGCCAGTAGACTGTGTTCAAAGGATCCAAGGAGAGG
TTATGTCAAAAAAATGCTCCCATGTGGAATTTCCGAACCACAATCTTCCT
CATCTGAGGAAAAAATGTGATCAAGAACTTATGAGATCCGTAAGAATTGG
AAATAACGTTTCATTAGTACCATACAAGATATATTATTACAAGCCATTAC
TATCCAGCTTCAAGTATttgtttaaatgaaaaaaaaattttcaactttgt
cATTCTTGGATCTCACACATCGTTAACCCTGGTATCATGTCTGACGTCTA
TGATGGCCAAATTTGGAAAGACTTTTCAAACCCTGAAAAATGGACTTCTT
GAACCATCCTGGTCGACTTGGGCTTATGCTCGATTGCGATTGGTTTTGCC
CTTATAAACATGTCAAAAAAAAAGAGTATTGGGGCTATTTACTCTGTTAT
TGTGAACTTGCCGAGAAGTATCAGGTTTAAGAAAGAAAACATCATTCTGC
ATGGCCTTATTCCCAATATGGACAAGGAACCACCTACAAACACATTTATC
AGCCCTCTTGTTGACGAGCTGCTTGTGGCTTGGAATGATGGTTTTGAAAT
TCAGATCCACGGCAACAATGTCAAGAACATCAAAGCAGCTGTTCTGTGCG
TAGGATGTGACATCCCTG
Run BLAST on NCBI

transcript from alignment at sc0001614:10616..12052+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037331 ID=TCONS_00037331|Name=TCONS_00037331|organism=Clytia hemisphaerica|type=transcript|length=1437bp|location=Sequence derived from alignment at sc0001614:10616..12052+ (Clytia hemisphaerica)
TAACAATCTAAACGATCAGGGTCATGTTACTTctgaaaattctcaaaatg
aTGATATAGACATTGAAGCCATTGAAAATATCGATGAAGAGATATTGGAA
ATGATTAGTCGACGTTATCAGAATGGAGATGGACCTGATGAAACGTTTGT
GGACGAAACGTTTGTAAATGAAACTTTAAATTAGTCATTTTTAAATGTTA
CAGATCCAGTAAATTTATGTGAACATTCAGCAATTGTGACATGGATTTGC
CTTTTGCAATAGAGCTTCAATATAACAGACAATGCTTTTGAATACATATT
GAAATTTATCTATGGATTATTAACTATCTTGGTTAGTCAATTTAATTTAG
ATTCAGCAGTGTTAATCGGATTTCCAAGCAGTTTGTATCTTTTCCATAAG
TTTGTCAATAAAAAAGAATGCTTCAAGAAGTATGTTGTGTGTCTAAAATG
TCATATGCTCTATAAGCCAGTAGACTGTGTTCAAAGGATCCAAGGAGAGG
TTATGTCAAAAAAATGCTCCCATGTGGAATTTCCGAACCACAATCTTCCT
CATCTGAGGAAAAAATGTGATCAAGAACTTATGAGATCCGTAAGAATTGG
AAATAACGTTTCATTAGTACCATACAAGATATATTATTACAAGCCATTAC
TATCCAGCTTCAAGTATttgtttaaatgaaaaaaaaattttcaactttgt
cATTCTTGGATCTCACACATCGTTAACCCTGGTATCATGTCTGACGTCTA
TGATGGCCAAATTTGGAAAGACTTTTCAAACCCTGAAAAATGGACTTCTT
GAACCATCCTGGTCGACTTGGGCTTATGCTCGATTGCGATTGGTTTTGCC
CTTATAAACATGTCAAAAAAAAAGAGTATTGGGGCTATTTACTCTGTTAT
TGTGAACTTGCCGAGAAGTATCAGGTAGACACATTATTTGTTGCTTAAAT
ATTGTCATTAGAAATTTATTCCCAAGAGGTACCTCTGACCATACCATCAA
TTAAGATTTTATGCTCATCATGGCCTCAAAAATGGTTCTtgacacatttt
ttcaaaatcaaaatccttAGCCCCATGTATATAGCTTCAtaactttttag
gcttttggGCATCACCACCTTGACTAAAAAAATTCCataccaaaattttt
tttgaaagaaaataaaaaaaactaataagagCAAGAATTTCTTTAGTTAT
AAAAGATACAACTAAggatttttactttattttcattcattagGTTTAAG
AAAGAAAACATCATTCTGCATGGCCTTATTCCCAATATGGACAAGGAACC
ACCTACAAACACATTTATCAGCCCTCTTGTTGACGAGCTGCTTGTGGCTT
GGAATGATGGTTTTGAAATTCAGATCCACGGCAACAATGTCAAGAACATC
AAAGCAGCTGTTCTGTGCGTAGGATGTGACATCCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022116XLOC_022116Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037331-exon-sc0001614-1491911889:10616..11539TCONS_00037331-exon-sc0001614-1491911889:10616..11539Clytia hemisphaericaexon
TCONS_00037331-exon-sc0001614-1510915933:10616..11539TCONS_00037331-exon-sc0001614-1510915933:10616..11539Clytia hemisphaericaexon
TCONS_00037331-exon-sc0001614-1575043694:10616..11539TCONS_00037331-exon-sc0001614-1575043694:10616..11539Clytia hemisphaericaexon
TCONS_00037331-exon-sc0001614-1491911889:11859..12052TCONS_00037331-exon-sc0001614-1491911889:11859..12052Clytia hemisphaericaexon
TCONS_00037331-exon-sc0001614-1510915933:11859..12052TCONS_00037331-exon-sc0001614-1510915933:11859..12052Clytia hemisphaericaexon
TCONS_00037331-exon-sc0001614-1575043694:11859..12052TCONS_00037331-exon-sc0001614-1575043694:11859..12052Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001614supercontigsc0001614:10616..12052 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.195147	0.152239	0.0441911	0	0.0526334	0.0831832	0.100357	0.140929	0.296004	0.0814775	0.039542	0.337914	0.207658	0.350439	0.243784	0.380535	0.146496	0.210215	0.663826	0.520985	0.301887	0.331312	0.134251	0.203423	0	0.0373985	0.0535171	0.171345	0.216598	0.0882717
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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