TCONS_00037330 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037330
Unique NameTCONS_00037330
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037330 ID=TCONS_00037330|Name=TCONS_00037330|organism=Clytia hemisphaerica|type=transcript|length=516bp
TTTAGGAAGAGTAAGAGTTTCAGTCACGAATTCTAGGTTTGATCGTTCTG
TAAGTATCTGAAATTTAGCTCATTATCATTTCCCCATCCTAGGAATAAAG
CTGTCCCAGCTTTCGTTCGTCCAAGAAACCAATTTATAAATTCGTATCCA
TAAGTCCATTTGTATGTATCGTTTAAGTCCGTATTAAAATTGTCCATTCT
TCCATTATTTAATCGCATTTACGCCGAGACTCTTGgcttgaaaaaaaaga
gaaagacacTTTAAGAGTGtctattaaaatattattaacAGTTATTCATA
CCttttcatccaaaatttttaaatactttttctTAAAGACTGTTAGATGC
TATAAGAGCATCTATATTCAAATATTAAAATACTGCAACTGTTATCGTTA
TTTATAAAACCGTTAGATACTATAAGAGTATctctatttttcataattta
taaTACTTATATTCAGTAAGATTTAGCTTGGTATATTAAGAATtcaaatt
ttccttcaaaattttc
Run BLAST on NCBI

transcript from alignment at sc0001613:35081..35596

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037330 ID=TCONS_00037330|Name=TCONS_00037330|organism=Clytia hemisphaerica|type=transcript|length=516bp|location=Sequence derived from alignment at sc0001613:35081..35596 (Clytia hemisphaerica)
gaaaattttgaaggaaaatttgaATTCTTAATATACCAAGCTAAATCTTA
CTGAATATAAGTAttataaattatgaaaaatagagATACTCTTATAGTAT
CTAACGGTTTTATAAATAACGATAACAGTTGCAGTATTTTAATATTTGAA
TATAGATGCTCTTATAGCATCTAACAGTCTTTAagaaaaagtatttaaaa
attttggatgaaaaGGTATGAATAACTgttaataatattttaatagaCAC
TCTTAAAgtgtctttctcttttttttcaagcCAAGAGTCTCGGCGTAAAT
GCGATTAAATAATGGAAGAATGGACAATTTTAATACGGACTTAAACGATA
CATACAAATGGACTTATGGATACGAATTTATAAATTGGTTTCTTGGACGA
ACGAAAGCTGGGACAGCTTTATTCCTAGGATGGGGAAATGATAATGAGCT
AAATTTCAGATACTTACAGAACGATCAAACCTAGAATTCGTGACTGAAAC
TCTTACTCTTCCTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022115XLOC_022115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037330-exon-sc0001613-1491911889:35081..35596TCONS_00037330-exon-sc0001613-1491911889:35081..35596Clytia hemisphaericaexon
TCONS_00037330-exon-sc0001613-1510915933:35081..35596TCONS_00037330-exon-sc0001613-1510915933:35081..35596Clytia hemisphaericaexon
TCONS_00037330-exon-sc0001613-1575043694:35081..35596TCONS_00037330-exon-sc0001613-1575043694:35081..35596Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001613supercontigsc0001613:35081..35596 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.128012	0	0	0.148574	0.139093	0.38953	0	0	0	0.538	0.399084	0.590583	0.633786	0.607267	0.889185	1.71984	2.44243	0.44693	0.490493	0.530008	0.240927	0.248149	0.221467	0.316919	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top