TCONS_00037326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037326
Unique NameTCONS_00037326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037326 ID=TCONS_00037326|Name=TCONS_00037326|organism=Clytia hemisphaerica|type=transcript|length=397bp
ACTTAACATCAGCAGCAAAGCCCTTATGACAGATGAGGAGGAAGTAGAAG
TAGCTGATAGGCAAGCTGAAAAACTGAATGAGAATGTTCATGCACATCAA
CAGAGATATCACGAACATCTCCATGCAGCTTCGTCAATCAAGAGCAAGTC
AAAGAAAAGTTCACAGTCAGGATCAAGGTCAAGTAGATCATCAAAGATCC
TCGACAAGAAAGCCAAGCTAGCTGAGCTGCAAGTGCAACAAAAGTATGTA
GCAGAGAAGCAAGAGCAAGAAAGACAATTAATCATCAAACAAGAGCAGTA
TAAGCAAAAGCAAAAGGAGCTTGAAGAGGAGGAGATTTCAATCAAGAAAA
TGTACGAGCAGGCAGAGAATCTCAAGTTGAAATTTGAAGTTGAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00037326-protein

>TCONS_00037326-protein ID=TCONS_00037326-protein|Name=TCONS_00037326-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
LNISSKALMTDEEEVEVADRQAEKLNENVHAHQQRYHEHLHAASSIKSKS
KKSSQSGSRSSRSSKILDKKAKLAELQVQQKYVAEKQEQERQLIIKQEQY
KQKQKELEEEEISIKKMYEQAENLKLKFEVEK
Run BLAST on NCBI

transcript from alignment at sc0001613:1243..1639

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037326 ID=TCONS_00037326|Name=TCONS_00037326|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at sc0001613:1243..1639 (Clytia hemisphaerica)
CTTTTCAACTTCAAATTTCAACTTGAGATTCTCTGCCTGCTCGTACATTT
TCTTGATTGAAATCTCCTCCTCTTCAAGCTCCTTTTGCTTTTGCTTATAC
TGCTCTTGTTTGATGATTAATTGTCTTTCTTGCTCTTGCTTCTCTGCTAC
ATACTTTTGTTGCACTTGCAGCTCAGCTAGCTTGGCTTTCTTGTCGAGGA
TCTTTGATGATCTACTTGACCTTGATCCTGACTGTGAACTTTTCTTTGAC
TTGCTCTTGATTGACGAAGCTGCATGGAGATGTTCGTGATATCTCTGTTG
ATGTGCATGAACATTCTCATTCAGTTTTTCAGCTTGCCTATCAGCTACTT
CTACTTCCTCCTCATCTGTCATAAGGGCTTTGCTGCTGATGTTAAGT

Coding sequence (CDS) from alignment at sc0001613:1243..1639

>TCONS_00037326 ID=TCONS_00037326|Name=TCONS_00037326|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0001613:1243..1639 (Clytia hemisphaerica)
CTTTTCAACTTCAAATTTCAACTTGAGATTCTCTGCCTGCTCGTACATTT
TCTTGATTGAAATCTCCTCCTCTTCAAGCTCCTTTTGCTTTTGCTTATAC
TGCTCTTGTTTGATGATTAATTGTCTTTCTTGCTCTTGCTTCTCTGCTAC
ATACTTTTGTTGCACTTGCAGCTCAGCTAGCTTGGCTTTCTTGTCGAGGA
TCTTTGATGATCTACTTGACCTTGATCCTGACTGTGAACTTTTCTTTGAC
TTGCTCTTGATTGACGAAGCTGCATGGAGATGTTCGTGATATCTCTGTTG
ATGTGCATGAACATTCTCATTCAGTTTTTCAGCTTGCCTATCAGCTACTT
CTACTTCCTCCTCATCTGTCATAAGGGCTTTGCTGCTGATGTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022111XLOC_022111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037326-exon-sc0001613-1491911889:1243..1639TCONS_00037326-exon-sc0001613-1491911889:1243..1639Clytia hemisphaericaexon
TCONS_00037326-exon-sc0001613-1510915933:1243..1639TCONS_00037326-exon-sc0001613-1510915933:1243..1639Clytia hemisphaericaexon
TCONS_00037326-exon-sc0001613-1575043694:1243..1639TCONS_00037326-exon-sc0001613-1575043694:1243..1639Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037326-proteinTCONS_00037326-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001613supercontigsc0001613:1243..1639 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68316	2.04422	0.892304	0	2.13278	1.0635	3.2201	3.6167	0.619554	0.393952	1.9119	1.16005	0.0576093	0.782035	0.729524	1.08481	0.56666	0.897924	0	0.209918	0.509453	0	0.216373	0.590143	0.755838	0.361651	0.258761	0	0.794648	0.565587
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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