TCONS_00037315 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037315
Unique NameTCONS_00037315
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037315 ID=TCONS_00037315|Name=TCONS_00037315|organism=Clytia hemisphaerica|type=transcript|length=287bp
ATCTTGGGATAGAATCACTGATTAACAATTTTCCAAATGCTTTTCATGAT
AGCTATGCCCTgacaaagtttcattttttgtgcCGGAATCCCTTTAATGC
gcacaaaatatatttggagGAGTTTTTACTCAAATATTCATTAGTCTTTG
TTTTtccaatgtttcaatttttctagaatttttccGTCCCATCCTTCCAT
AGTAAGTCAGGGGGCATTGACAGGTGAATAGTACCAAATCTCcacaattc
aattttcatgaaaGTAAAGTCTAAGAAAATATCAGNN
Run BLAST on NCBI

transcript from alignment at sc0001612:30422..30708

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037315 ID=TCONS_00037315|Name=TCONS_00037315|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0001612:30422..30708 (Clytia hemisphaerica)
NNCTGATATTTTCTTAGACTTTACtttcatgaaaattgaattgtgGAGAT
TTGGTACTATTCACCTGTCAATGCCCCCTGACTTACTATGGAAGGATGGG
ACggaaaaattctagaaaaattgaaacattggaAAAACAAAGACTAATGA
ATATTTGAGTAAAAACTCctccaaatatattttgtgcGCATTAAAGGGAT
TCCGgcacaaaaaatgaaactttgtcAGGGCATAGCTATCATGAAAAGCA
TTTGGAAAATTGTTAATCAGTGATTCTATCCCAAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022101XLOC_022101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037315-exon-sc0001612-1491911889:30422..30708TCONS_00037315-exon-sc0001612-1491911889:30422..30708Clytia hemisphaericaexon
TCONS_00037315-exon-sc0001612-1510915933:30422..30708TCONS_00037315-exon-sc0001612-1510915933:30422..30708Clytia hemisphaericaexon
TCONS_00037315-exon-sc0001612-1575043694:30422..30708TCONS_00037315-exon-sc0001612-1575043694:30422..30708Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001612supercontigsc0001612:30422..30708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.5323	12.7012	6.87298	6.76303	82.0675	55.5068	37.5186	33.2473	25.7627	35.262	37.3063	23.3982	24.1327	18.5558	16.6811	22.1298	26.2327	28.5056	16.4941	22.9766	17.3526	24.2256	16.6952	16.74	11.6564	29.5245	27.2908	19.3598	12.5401	9.17545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037315 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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