TCONS_00037293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037293
Unique NameTCONS_00037293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1893

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037293 ID=TCONS_00037293|Name=TCONS_00037293|organism=Clytia hemisphaerica|type=transcript|length=1893bp
CCATTTCGTTGGAgggaaaaagattcaaaattaatttttttaccaccaaG
CTTGTATGGAGAATTTTTATGTAATAGATGAACAAACTATAGGAAATAGG
CTAATGGttgGCATAATTGATGAAAAAAGCATGGAAATCGCTATCGAGTT
CATAAGGATATCTCTCAATCAATTgtGCGTTATTGGACTGGGAACCACCT
TGAACGACGTTTATATCCCAACAGCTGAAGATGAACTACTTGGAATGCCG
GATAACCGCGagcatatcaaaattttgttgatgattGAGGGGTCGATACT
ATCTTTATCGAAGCTTATATCGGAAAAAAGTGGCCAAACACtcatgaaaa
gaaaaaacaaagacacaacaaagaaaaaactcaCCATTGGGTGCCATTTG
AAAATGCAGTTCCAAAGAATGGAGACACTAAACTTTGGCGAGTTGGTAGA
ACTCAAGAACTGCGATAAAACTTTGGACAATGGAAAATTGGCAACTTTCT
TTCGGAAAAGATCTCCCGAGAGTATGGAAGAAGAAGAGGATAATACTTTC
AAGACAAGATTAACAAAACTTGGGATTTCTGCAAGAGAGTATAGAGAAAA
ATTTGAAGACAACGACCATGAAAGAGCGAAAAGCCATAAAAACTATTTTG
ATTCGAAAGCAAAATGGAAAGTTGTCACGTCAACATTACCCTCATCTGCT
AAAAAAAGGAAACCCAATTCTGATGGAGATGACAATGACACTGACTCATG
ATACTAACTTTTTGTATTACTTTAAAGATAGACTTTGTTTTTAGTTAGat
atataaaattttgttttttggacctacctggaggtcctataaatcaACAA
ATCAAATCATGGCCTCTAAAGATATTCTAAGGGTTTTATTTATCatttaa
ttttgcattttttgatatGCATAATGGATTTTTCCATAATGCAATATGTA
TTCTGCGTTTTTCGTGACGCATTCTGCCCTAGAGATTAGATCAAGATTGG
ATCAATTTGATTAATTGTTTTATTAGCCTATTTCCTATAGTTCGTGCATC
TATTACATAAAAATCTCCATACAAGCttggtggtaaaaaaattcaatttg
aatCTTTTTCCCTCCAACGAAATAATTGATTTTAGCAATTAGTCTAAGTG
TCTTTGGAACTCAACTACGATATTCTATTATATAATCCTTTGTTAGCGCT
TTCTCCCAATTCACAAAAGGGTAACTGACAAAAGGAATCTGACTATAAAA
TGACAAGAGAAACGATTCAAATAAAAGTATCGCGAAAGTTTGGAAATAGG
GTAATGGGCCCGGCcaaccctgaaattccaaaaatcaaaataataatgaa
attattttaggtggagcatttttattttcattgctttataGACTACCAAA
TTCTCATGTGTTCAATTTATCATATCATTTATGATTTCGAGTTTCTTTGT
CGTCAAGTAGTATTTTTTGCTATCTTTTTACGAGATTTTCtagtttaaat
tctttttttattattattcttCACCGTTCGACcttcttttttgggtagct
tatGGCTCGTAGATTAAATTTGCCTCGTCTTATATagattatgcattatg
caatcccaactggcacacaacgttcatctaacgttcctCTAACATCCaga
acgtccatataacgttatttcaacgttgaaacaatgttgtgtgccagctg
ggatttgTACTTGgccttttttttctataaaagatTACTACTTTATTACC
AGGGTTTTGTTTTCTGTTTATTTGCTTAAGTATTATTGgacatttttata
tttatagGATTTTTTACATGTAAATACATTTTGAACTTacctttgaaaat
attcaaacatGATTGTCTTTTAATTGATTGACAAAGTGAATTA
Run BLAST on NCBI

transcript from alignment at sc0001610:8146..13225-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037293 ID=TCONS_00037293|Name=TCONS_00037293|organism=Clytia hemisphaerica|type=transcript|length=5080bp|location=Sequence derived from alignment at sc0001610:8146..13225- (Clytia hemisphaerica)
CCATTTCGTTGGAGGGAAAAAGATTCAAAATTAATTTTTTTACCACCAAG
CTTGTATGGAGAATTTTTATGTAATAGATGAACAAACTATAGGAAATAGG
CTAATGGGTGGGGATTACGAATTCTATTGTTTACAGCTAAAAAATTCAGT
GGGGATTGCCAAAATTCTAATGTTTTTCCCAGTGGGGATGAGAGTTCAGT
GCAGTTTTTCAATGAAGATGAATTTTCAGAGTATTTTTCTCACCGAGGAA
AATTTTAGGCCGATTTTTCCAGTGGGGAGGAGGTCCCACCGGGTCTGTGA
CACGGGGATGTTTTAATAGAATTCCATTGCTTATCTCTTTAATAAAGGTA
CTATGAATATAAGTCCAATTGATAAACCCACTTAAAATAGTACAATCTAT
AAAGACGCGCATTGAAAAATACTGTATAAAATTTCATAGGATTCGTGTTT
TCAGTACATGATCTTTTTCTACGTCACTGCAGTAATCGAATTTTTATTGT
AAATCACTCCTTTGCGAATCGAGATAAATTTAACAAAGACAGCGACAATA
GAAAACCGTTCTTAAATTCCCAACTAGTTTAGAATTATTACAAAAGTTAG
TTTTTCTTAATGTTTTTATTGAAGAGAAATCTGCACAGATTTGTGTATTT
TTCCCTGTAAATTGAATAAAAAATAGCATGTAGCAGATACACGAATCCTA
TGAAATAGGCTATGGTGCTAATGGTAATTTCACTTTCGTTCATCGAATAT
TTCGTATTGAGAGGTGTTAAGCGGCTTCCAGGCTATGTTTTAAGCCATAT
TTGATCATTTTTGAGCTTTCAGATCCTGAGATCCTAAGGTCTTCAGTTAA
GTCTTAATAACGTTAAAACTCTCTACTTTAAAAACGTACTTTAAAGCACT
TATAATCACTTGTGGTTTTAAATGTTTTTAAGTAATTCTCCTTTTTTCTC
AAATATTAAGGTGCTGATAGTAGTAATTTTATTTTATTTTAGTTGGCATA
ATTGATGAAAAAAGCATGGAAATCGCTATCGAGTTCATAAGGATATCTCT
CAATCAATTGTGTAAGTCTTTAGCTTCATTGAAAGCACACTGAAAATAGA
ACGATGAACAATTCATTCATAGTGGCTACATCGTTCCCAGATATTGATTA
TTCATAAAATTCTGACATCTTTCAATACATAGCATAAAAAAAAACTGGTA
ATAAATATTTCTACATATTATAGGCGTTATTGGACTGGGAACCACCTTGA
ACGACGTTTATATCCCAACAGCTGAAGATGAACTACTTGGAATGCCGGAT
AACCGCGAGCATATCAAAATTTTGTTGATGATTGAGGGGTCGATACTATC
TTTATCGAAGCTTATATCGGAAAAAAGTGGCCAAACACTCATGAAAAGAA
AAAACAAAGACACAACAAAGAAAAAACTCACCATTGGGTGCCATTTGAAA
ATGCAGTTCCAAAGAATGGAGACACTAAACTTTGGCGAGTTGGTAGAACT
CAAGAACTGCGATAAAACTTTGGACAATGGAAAATTGGTACGGAAATCTC
TTTTCTTCTAACTCTCAATTCTTTGATCGATAGTGGTGAAAAATTGTATT
ACTCAATTGTTGCATTCAACTAAAGAAAAGGGTTTGTAAAATTACGATTA
TATTTGCTTCTTTAACAACATGAATAAAAAAATTTTATTTCATCATTTAG
GCAACTTTCTTTCGGAAAAGATCTCCCGAGAGTATGGAAGAAGAAGAGGA
TAATACTTTCAAGACAAGATTAACAAAACTTGGGATTTCTGCAAGAGAGT
ATAGAGAAAAATTTGAAGACAACGACCATGAAAGAGCGTATGTATATCAT
TTTGCCGCCTGTATTTGAAATTGGTATAAAAAATCCAACAATGTTCTGTC
ACAATTTCATTTCTATGAATGGCTTAGGTAAAAGAATTGATAGAGGTTGA
GCATTTCTCGCAATTCACACAAGAATCATTTTCGAATTTGTTCAAAAGTC
TAAATCGTTGTATTAAAATTGTTCAACATTGAAGTGCAGAATTTCAACTG
CTTGTATACTTTTGAATCACCTTTGTCACTCCAATAATTTTTTTATGAAG
TGAAAAAGATAACTTGCCAAAGTTGAGAATTGAGATCCTGTGTCATAAAG
AATATCAAAATTTTAATGTGACGCTCTTTTTCAAATTGTTTCACACTTTT
TTAAGTCAAAATTTAGAAATACTAGACGGAGTTTTGGCAAACTGATTGAT
GATGACGATTAACTGCCCGTTATTTTTGCTATGATGTAGATAAAAGACTT
AAGTAAAACAAACTGAAACTTTTGTCGATTAAGCTTAAAAGTTGTTAGCA
AGGTATTCCCTAGACTAAAGTATACTATTCTTTCTTTTTGATGGCGCAGA
GTTCAGCGAGTAGACTAAAGGATTACGCCATCTTGAATTTTTTACTTTCG
TTTTCAAAAAATATATGAAAATATATACAATGAATGAATCTTATTTTAAA
ATCCCATCAAGGTTTATGAGACTATAATGAAACATGAAAAAACCTCCAAA
ATTGGTTCATCAGACATGTTTTTGTTTTTGTCCAAAAAGAGACTGGATCT
AATGCCACAGACTTGCCAAAACCTTAAGAAAAGCTAAAAAATGAAACCTT
CGAAGTTACACTGGGCCGCTTGCGCCATCTAGTCTTTCAAAAAGTTATAG
GTGGCCTCCGGGCTAAGTATTACCAAGAGATATATCATCAAAATTTATTT
TTTCAATTTTTGTTTTTAACGAAGCGGCAACGAAGCTAGAAGTGCTTTTT
AACAATGAACACGTGAAACAAATGGAAAAAAATCATGACTGTATACATGA
ATGGGAGCCTCTTTCAGACAAGATAAGCTGTAGTTTGGAACAGTCTCCCT
TAGACTTCCGTTCTTTTTTAATCAAGTGATGAGGCAAAACATTCAATTAT
GCCTTAGATTTGGCTTTAATTGAAATAAAATCTGTAGATGCCAAGTAAGA
TATTTCGATGGAGTAAAGTTGGAGTTATATAGGCCCCATTACACCTGAGA
ATATGGGGAAGAATATGTCTCTGCAGCTGTTACTATTCGTATATTCTTGT
TCTAGATACACGTGAAAATACTCAAAAATGGAAAATCTCCATCTCCAAAT
TTCAATTTCGATCTGTGAAATTTTTGGATATTCTCCTGTAAATTACACAA
GAGAATTTAAAGATTTTATCAGATTTCTTTGTTAACTTTAATTTTGATAA
GTAAAACGGGGGTAAAACGGAAGTCCTTTTATTTCCTACTTTCCCCCTTT
TTTCGAAACCCAACGCTTTCGTGACGTGGAATTCCTTTGAAAAGTTTGTT
TGCATAATCTACGCAATAGCCAAATTCCACACTAATCTCCACTTTCAATA
GGCTGTTATTGTTGAATATTTGGACACGTCCAAAGGAATGGAAAATTATG
AAATTAATTAAACAATAGAAACTGGATTAGGGACATTTCAGCAAATTTTT
TGTACTATTCTTTCAGTTGTTACACGGGAGAATTTAATGAATTCGTCATG
TGTGCATTAAATTTCACATTATTCTTATAGATAGATAGATAGATAGAACC
GTGGGTTTGAACCGGGAACCCCTGGATTGTGACACTGGCACCTTAGACCA
CTCGGCCATCGCTCCCTGGACATCATTCTTCCCCTATATTCTCAAATATT
CATAGGTGTAATGGGGCCTGTAGATTTCCACTTTAAATAAAAAATAAATA
ACTTCTTTTTTACTAACGCGTTTTAACTTTCTCTTTAAAATAACTCTTTT
TATTCCTCCTCCAGGAAAAGCCATAAAAACTATTTTGATTCGAAAGCAAA
ATGGAAAGTTGTCACGTCAACATTACCCTCATCTGCTAAAAAAAGGAAAC
CCAATTCTGATGGAGATGACAATGACACTGACTCATGATACTAACTTTTT
GTATTACTTTAAAGATAGACTTTGTTTTTAGTTAGATATATAAAATTTTG
TTTTTTGGACCTACCTGGAGGTCCTATAAATCAACAAATCAAATCATGGC
CTCTAAAGATATTCTAAGGGTTTTATTTATCATTTAATTTTGCATTTTTT
GATATGCATAATGGATTTTTCCATAATGCAATATGTATTCTGCGTTTTTC
GTGACGCATTCTGCCCTAGAGATTAGATCAAGATTGGATCAATTTGATTA
ATTGTTTTATTAGCCTATTTCCTATAGTTCGTGCATCTATTACATAAAAA
TCTCCATACAAGCTTGGTGGTAAAAAAATTCAATTTGAATCTTTTTCCCT
CCAACGAAATAATTGATTTTAGCAATTAGTCTAAGTGTCTTTGGAACTCA
ACTACGATATTCTATTATATAATCCTTTGTTAGCGCTTTCTCCCAATTCA
CAAAAGGGTAACTGACAAAAGGAATCTGACTATAAAATGACAAGAGAAAC
GATTCAAATAAAAGTATCGCGAAAGTTTGGAAATAGGGTAATGGGCCCGG
CCAACCCTGAAATTCCAAAAATCAAAATAATAATGAAATTATTTTAGGTG
GAGCATTTTTATTTTCATTGCTTTATAGACTACCAAATTCTCATGTGTTC
AATTTATCATATCATTTATGATTTCGAGTTTCTTTGTCGTCAAGTAGTAT
TTTTTGCTATCTTTTTACGAGATTTTCTAGTTTAAATTCTTTTTTTATTA
TTATTCTTCACCGTTCGACCTTCTTTTTTGGGTAGCTTATGGCTCGTAGA
TTAAATTTGCCTCGTCTTATATAGATTATGCATTATGCAATCCCAACTGG
CACACAACGTTCATCTAACGTTCCTCTAACATCCAGAACGTCCATATAAC
GTTATTTCAACGTTGAAACAATGTTGTGTGCCAGCTGGGATTTGTACTTG
GCCTTTTTTTTCTATAAAAGATTACTACTTTATTACCAGGGTTTTGTTTT
CTGTTTATTTGCTTAAGTATTATTGGACATTTTTATATTTATAGGATTTT
TTACATGTAAATACATTTTGAACTTACCTTTGAAAATATTCAAACATGAT
TGTCTTTTAATTGATTGACAAAGTGAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022083XLOC_022083Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037293-exon-sc0001610-1575043694:13119..13225TCONS_00037293-exon-sc0001610-1575043694:13119..13225Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1575043694:12165..12233TCONS_00037293-exon-sc0001610-1575043694:12165..12233Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1575043694:11689..12002TCONS_00037293-exon-sc0001610-1575043694:11689..12002Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1575043694:11389..11525TCONS_00037293-exon-sc0001610-1575043694:11389..11525Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1575043694:8146..9411TCONS_00037293-exon-sc0001610-1575043694:8146..9411Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1510915933:13119..13225TCONS_00037293-exon-sc0001610-1510915933:13119..13225Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1510915933:12165..12233TCONS_00037293-exon-sc0001610-1510915933:12165..12233Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1510915933:11689..12002TCONS_00037293-exon-sc0001610-1510915933:11689..12002Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1510915933:11389..11525TCONS_00037293-exon-sc0001610-1510915933:11389..11525Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1510915933:8146..9411TCONS_00037293-exon-sc0001610-1510915933:8146..9411Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1491911889:13119..13225TCONS_00037293-exon-sc0001610-1491911889:13119..13225Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1491911889:12165..12233TCONS_00037293-exon-sc0001610-1491911889:12165..12233Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1491911889:11689..12002TCONS_00037293-exon-sc0001610-1491911889:11689..12002Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1491911889:11389..11525TCONS_00037293-exon-sc0001610-1491911889:11389..11525Clytia hemisphaericaexon
TCONS_00037293-exon-sc0001610-1491911889:8146..9411TCONS_00037293-exon-sc0001610-1491911889:8146..9411Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001610supercontigsc0001610:8146..13225 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.933988	1.09715	2.28411	2.27617	0	0	0	0	0	0	0	0	0	0	1.21516	2.0149	0.317538	0.429985	0.0104907	0.109653	0.0205599	0	0.512083	0.551951	0	0	0	0	0.302074	0.235984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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