|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037288 ID=TCONS_00037288|Name=TCONS_00037288|organism=Clytia hemisphaerica|type=transcript|length=1082bp
GTCCATTTTGGAGATTTTCGTAGACAATGATCTTTTGGACATACATACAT
GGCAACTTCCATCACTGCCTTTTCCTTACCAAAGGGTATTCTCAAAGCGC
CTTGGACTTTAATCGCTAATTCACCGATACTCAAAACGGTCTTACAAGCT
TGGCATTTTGCTGTGTAGTTTTCCTTATGGTGCACCGTGAAACTTTGGGG
ATTATTGAAATCAGGGTGCTGCAGCAAAATGGCTCTCAGATCTTTCcctg
tttttgtgttttttcttgTACTATTATATTTATCGTCCactttctttaaa
attgatCTTAGATCTTCATCTTCTATATGGCGCTGAAACGAGCACTCCTC
TGGCTTTCTATCCAAGGGATAGAATAGTACAAACATGAGGTGGGTGCAAT
AAACTTTTGAcccgtttttttttaagtcGGGACATGTGCAAGATGGAACA
TTACAAATTTGTGTTTTGTATGCAGCTGTCCCGTTCACACTGCTGCATAC
ACTGAAAACCCAGTTGAGAGGGCTATTTTCTTCGTATGATCTTAGTTTCA
TGGTGTCTTTTAAAGAATGCGTGGTAGCGATTCGGCACTTTAAGATATCG
TCCAACCGTGTCTTTTTGGTGGGTGGGTTACATCCTACATTTTCTGTGGT
CGGAGTTCTTTTAATGCCAGGTTCACGTCGCGTTACACCAAAGTCCAAGA
TGTCCTGGCCAAATCTATTGGCCGCTTCTATCTCTCTATTATCTCTTCTC
TGACTCGATTCGACAACCGACGGTCCACGCCCTCTGTTGTAATTTCCTTT
TTCCAGGTCTTTCATGTCTTGAGCCAGCAATATGTTGTCTTTGACGTCAA
ACATACACGTCTCGACCAACGATAGACCTacgttctttttgtttttccaa
CCGGCATGCACCACTTCCGAGAGGTTGGACCTGGGTGCCTGAATTGCGGT
GAATGCACGGAATATAAGATGTTTTCTATTATCCCACCATGCAAGCCAAT
CTTTTAGTTGAACCGCTGAAGctttaacaaaaaataaagaatttttacta
aatttcACTGTAAAGAGAAAAACTGCGTGTCT Run BLAST on NCBI protein sequence of TCONS_00037288-protein >TCONS_00037288-protein ID=TCONS_00037288-protein|Name=TCONS_00037288-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
RHAVFLFTVKFSKNSLFFVKASAVQLKDWLAWWDNRKHLIFRAFTAIQAP
RSNLSEVVHAGWKNKKNVGLSLVETCMFDVKDNILLAQDMKDLEKGNYNR
GRGPSVVESSQRRDNREIEAANRFGQDILDFGVTRREPGIKRTPTTENVG
CNPPTKKTRLDDILKCRIATTHSLKDTMKLRSYEENSPLNWVFSVCSSVN
GTAAYKTQICNVPSCTCPDLKKNGSKVYCTHLMFVLFYPLDRKPEECSFQ
RHIEDEDLRSILKKVDDKYNSTRKNTKTGKDLRAILLQHPDFNNPQSFTV
HHKENYTAKCQACKTVLSIGELAIKVQGALRIPFGKEKAVMEVAMYVCPK
DHCLRKSPKW Run BLAST on NCBI transcript from alignment at sc0001608:38644..39725 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037288 ID=TCONS_00037288|Name=TCONS_00037288|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at sc0001608:38644..39725 (Clytia hemisphaerica)
AGACACGCAGTTTTTCTCTTTACAGTgaaatttagtaaaaattctttatt
ttttgttaaagCTTCAGCGGTTCAACTAAAAGATTGGCTTGCATGGTGGG
ATAATAGAAAACATCTTATATTCCGTGCATTCACCGCAATTCAGGCACCC
AGGTCCAACCTCTCGGAAGTGGTGCATGCCGGttggaaaaacaaaaagaa
cgtAGGTCTATCGTTGGTCGAGACGTGTATGTTTGACGTCAAAGACAACA
TATTGCTGGCTCAAGACATGAAAGACCTGGAAAAAGGAAATTACAACAGA
GGGCGTGGACCGTCGGTTGTCGAATCGAGTCAGAGAAGAGATAATAGAGA
GATAGAAGCGGCCAATAGATTTGGCCAGGACATCTTGGACTTTGGTGTAA
CGCGACGTGAACCTGGCATTAAAAGAACTCCGACCACAGAAAATGTAGGA
TGTAACCCACCCACCAAAAAGACACGGTTGGACGATATCTTAAAGTGCCG
AATCGCTACCACGCATTCTTTAAAAGACACCATGAAACTAAGATCATACG
AAGAAAATAGCCCTCTCAACTGGGTTTTCAGTGTATGCAGCAGTGTGAAC
GGGACAGCTGCATACAAAACACAAATTTGTAATGTTCCATCTTGCACATG
TCCCgacttaaaaaaaaacgggTCAAAAGTTTATTGCACCCACCTCATGT
TTGTACTATTCTATCCCTTGGATAGAAAGCCAGAGGAGTGCTCGTTTCAG
CGCCATATAGAAGATGAAGATCTAAGatcaattttaaagaaagtGGACGA
TAAATATAATAGTAcaagaaaaaacacaaaaacaggGAAAGATCTGAGAG
CCATTTTGCTGCAGCACCCTGATTTCAATAATCCCCAAAGTTTCACGGTG
CACCATAAGGAAAACTACACAGCAAAATGCCAAGCTTGTAAGACCGTTTT
GAGTATCGGTGAATTAGCGATTAAAGTCCAAGGCGCTTTGAGAATACCCT
TTGGTAAGGAAAAGGCAGTGATGGAAGTTGCCATGTATGTATGTCCAAAA
GATCATTGTCTACGAAAATCTCCAAAATGGAC Coding sequence (CDS) from alignment at sc0001608:38644..39725 >TCONS_00037288 ID=TCONS_00037288|Name=TCONS_00037288|organism=Clytia hemisphaerica|type=CDS|length=1080bp|location=Sequence derived from alignment at sc0001608:38644..39725 (Clytia hemisphaerica)
AGACACGCAGTTTTTCTCTTTACAGTgaaatttagtaaaaattctttatt
ttttgttaaagCTTCAGCGGTTCAACTAAAAGATTGGCTTGCATGGTGGG
ATAATAGAAAACATCTTATATTCCGTGCATTCACCGCAATTCAGGCACCC
AGGTCCAACCTCTCGGAAGTGGTGCATGCCGGttggaaaaacaaaaagaa
cgtAGGTCTATCGTTGGTCGAGACGTGTATGTTTGACGTCAAAGACAACA
TATTGCTGGCTCAAGACATGAAAGACCTGGAAAAAGGAAATTACAACAGA
GGGCGTGGACCGTCGGTTGTCGAATCGAGTCAGAGAAGAGATAATAGAGA
GATAGAAGCGGCCAATAGATTTGGCCAGGACATCTTGGACTTTGGTGTAA
CGCGACGTGAACCTGGCATTAAAAGAACTCCGACCACAGAAAATGTAGGA
TGTAACCCACCCACCAAAAAGACACGGTTGGACGATATCTTAAAGTGCCG
AATCGCTACCACGCATTCTTTAAAAGACACCATGAAACTAAGATCATACG
AAGAAAATAGCCCTCTCAACTGGGTTTTCAGTGTATGCAGCAGTGTGAAC
GGGACAGCTGCATACAAAACACAAATTTGTAATGTTCCATCTTGCACATG
TCCCgacttaaaaaaaaacgggTCAAAAGTTTATTGCACCCACCTCATGT
TTGTACTATTCTATCCCTTGGATAGAAAGCCAGAGGAGTGCTCGTTTCAG
CGCCATATAGAAGATGAAGATCTAAGatcaattttaaagaaagtGGACGA
TAAATATAATAGTAcaagaaaaaacacaaaaacaggGAAAGATCTGAGAG
CCATTTTGCTGCAGCACCCTGATTTCAATAATCCCCAAAGTTTCACGGTG
CACCATAAGGAAAACTACACAGCAAAATGCCAAGCTTGTAAGACCGTTTT
GAGTATCGGTGAATTAGCGATTAAAGTCCAAGGCGCTTTGAGAATACCCT
TTGGTAAGGAAAAGGCAGTGATGGAAGTTGCCATGTATGTATGTCCAAAA
GATCATTGTCTACGAAAATCTCCAAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037288-exon-sc0001608-1491911889:38644..39725 | TCONS_00037288-exon-sc0001608-1491911889:38644..39725 | Clytia hemisphaerica | exon |
| TCONS_00037288-exon-sc0001608-1510915933:38644..39725 | TCONS_00037288-exon-sc0001608-1510915933:38644..39725 | Clytia hemisphaerica | exon |
| TCONS_00037288-exon-sc0001608-1575043694:38644..39725 | TCONS_00037288-exon-sc0001608-1575043694:38644..39725 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001608 | supercontig | sc0001608:38644..39725 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
|
